RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 ZNF32P17041 273 aa13.19□□□□□ -0.3
CHD4-201ENST00000357008 WIPI1Q5MNZ9 446 aaPredicted RBP13.19□□□□□ -0.3
CHD4-201ENST00000357008 TTC3P53804 2025 aa13.19□□□□□ -0.3
CHD4-201ENST00000357008 GATCO43716 136 aaKnown RBP13.19□□□□□ -0.3
CHD4-201ENST00000357008 KLF9Q13886 244 aaPredicted RBP13.19□□□□□ -0.3
CHD4-201ENST00000357008 TRILQ7L0X0 811 aa13.19□□□□□ -0.3
CHD4-201ENST00000357008 VN1R4Q7Z5H5 301 aa13.19□□□□□ -0.3
CHD4-201ENST00000357008 OR4D9Q8NGE8 314 aa13.19□□□□□ -0.3
CHD4-201ENST00000357008 MRGPRX3Q96LB0 322 aa13.19□□□□□ -0.3
CHD4-201ENST00000357008 BET1LQ9NYM9 111 aa13.19□□□□□ -0.3
CHD4-201ENST00000357008 SPINK4O60575 86 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 POLR2GP62487 172 aaKnown RBP eCLIP13.18□□□□□ -0.3
CHD4-201ENST00000357008 ZNF79Q15937 498 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 Q1RN00 199 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 NCMAPQ5T1S8 102 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 IL22RA2Q969J5 263 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 GPR87Q9BY21 358 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 ANXA10Q9UJ72 324 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 HLA-GP17693 338 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 MANBALQ9NQG1 85 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 FRRS1LQ9P0K9 344 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 LIPGQ9Y5X9 500 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 NHLH1Q02575 133 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 NHLH2Q02577 135 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 LHFPL5Q8TAF8 219 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 FOXQ1Q9C009 403 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 ALS2Q96Q42 1657 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 A0A087X0M5 115 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 A0A1B0GX30 115 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 RRP8O43159 456 aaKnown RBP13.18□□□□□ -0.3
CHD4-201ENST00000357008 ETFRF1Q6IPR1 90 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 SLC2A8Q9NY64 477 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 ICAM5Q9UMF0 924 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 CCL27Q9Y4X3 112 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 C7orf77A4D0Y5 90 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 SLC25A5P05141 298 aaKnown RBP13.18□□□□□ -0.3
CHD4-201ENST00000357008 SMIM17P0DL12 118 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 ANAPC16Q96DE5 110 aa13.18□□□□□ -0.3
CHD4-201ENST00000357008 GABRG2P18507 467 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 TNFRSF1AP19438 455 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 FGF8P55075 233 aaPredicted RBP13.17□□□□□ -0.3
CHD4-201ENST00000357008 ISOC2Q96AB3 205 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 PSG11Q9UQ72 335 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 RAB7AP51149 207 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 DYNLT3P51808 116 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 PABPC1L2AQ5JQF8 200 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 CBLN3Q6UW01 205 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 OR2M7Q8NG81 312 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 ATP5SQ99766 215 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 ERVS71-1P61550 626 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 RNPS1Q15287 305 aaKnown RBP13.17□□□□□ -0.3
CHD4-201ENST00000357008 NPEPL1Q8NDH3 523 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 TRAV34A0A0B4J273 112 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 MPZL1O95297 269 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 CA6P23280 308 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 KIR2DS2P43631 304 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 CCL7P80098 99 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 ZNF547Q8IVP9 402 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 OR4D11Q8NGI4 311 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 PTP4A1Q93096 173 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 KCNK15Q9H427 330 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 FKBP11Q9NYL4 201 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 TOGARAM1Q9Y4F4 1720 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 NPIPB8E9PQR5 432 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 SOX15O60248 233 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 CT62P0C5K7 136 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 S100A4P26447 101 aaKnown RBP13.17□□□□□ -0.3
CHD4-201ENST00000357008 COX19Q49B96 90 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 PRSS3P2Q8NHM4 247 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 GNRHR2Q96P88 292 aa13.17□□□□□ -0.3
CHD4-201ENST00000357008 IGF2P01344 180 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 Q3ZCU0 254 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 LRRC10Q5BKY1 277 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 SPEM1Q8N4L4 309 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 SLC26A10Q8NG04 563 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 OR4F17Q8NGA8 305 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 NUBPLQ8TB37 319 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 PLPPR2Q96GM1 343 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 NDUFB3O43676 98 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 BMP5P22003 454 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 OPRK1P41145 380 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 IGSF11Q5DX21 431 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 SIRT7Q9NRC8 400 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 CDRT15L2A8MXV6 281 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 HOXC4P09017 264 aaPredicted RBP13.16□□□□□ -0.3
CHD4-201ENST00000357008 SCGB1C2P0DMR2 95 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 WDR13Q9H1Z4 485 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 BMPR1BO00238 502 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 OR5AL1P0C617 328 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 CISD3P0C7P0 127 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 CRISP2P16562 243 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 MICBQ29980 383 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 MOB3BQ86TA1 216 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 OR2Z1Q8NG97 314 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 OR11G2Q8NGC1 345 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 OR8B12Q8NGG6 310 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 OR6X1Q8NH79 312 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 GSX1Q9H4S2 264 aaPredicted RBP13.16□□□□□ -0.3
CHD4-201ENST00000357008 SH2D2AQ9NP31 389 aa13.16□□□□□ -0.3
CHD4-201ENST00000357008 SERGEFQ9UGK8 458 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms