RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 RAI1Q7Z5J4 1906 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 UBE2L5PA0A1B0GUS4 154 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 OR4A8P0C604 315 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ACP5P13686 325 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 CPMP14384 443 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 S100A4P26447 101 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 IKZF1Q13422 519 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 LTC4SQ16873 150 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 SPNS2Q8IVW8 549 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 D2HGDHQ8N465 521 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 OR14C36Q8NHC7 312 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ASB5Q8WWX0 329 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 SSBP4Q9BWG4 385 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 CHST8Q9H2A9 424 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 NXT1Q9UKK6 140 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 BOKQ9UMX3 212 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 A4GNTQ9UNA3 340 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 TNFSF18Q9UNG2 199 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 HS3ST3A1Q9Y663 406 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 DSCR3O14972 297 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 COX7A2P2O60397 106 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 SMIM10L2AP0DMW4 78 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 SMIM10L2BP0DMW5 78 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 UBE2L3P68036 154 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 SMN1Q16637 294 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF789Q5FWF6 425 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM268Q5VZI3 342 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 PDPNQ86YL7 162 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 MS4A7Q9GZW8 240 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 PTRH2Q9Y3E5 179 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 CD1AP06126 327 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 FOXK2Q01167 660 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 FOXB2Q5VYV0 432 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 OR4S2Q8NH73 311 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ACER1Q8TDN7 264 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 PARLQ9H300 379 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 NPIPB8E9PQR5 432 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 H3BQ15 152 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 RBFOX2O43251 390 aaKnown RBP eCLIP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 NPIPB7O75200 414 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ELLP55199 621 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 TMEM33P57088 247 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 PPIAP62937 165 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 MOGAT3Q86VF5 341 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 PELI3Q8N2H9 469 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 Q8N9G6 341 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 HIST1H4GQ99525 98 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 TRAV39A0A0B4J263 110 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 EIF4E2O60573 245 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 CBX7O95931 251 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 MAS1LP35410 378 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 HYAL1Q12794 435 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 NR2C2APQ86WQ0 139 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 GLIS3Q8NEA6 775 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 MRPL38Q96DV4 380 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 TSPAN32Q96QS1 320 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 CLDND1Q9NY35 253 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 TRBV4-1A0A0J9YWV2 114 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 DPRXA6NFQ7 191 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 CD160O95971 181 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 FCGR2AP12318 317 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 APOBEC1P41238 236 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 NTHL1P78549 312 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF816Q0VGE8 651 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 SIX1Q15475 284 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 XKR7Q5GH72 579 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 TMPRSS9Q7Z410 1059 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 CBLN2Q8IUK8 224 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 OR4F17Q8NGA8 305 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 OR10Q1Q8NGQ4 319 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 OSER1Q9NX31 292 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 GPR75O95800 540 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 P01737 135 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 RPL30P62888 115 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 OR1N2Q8NGR9 330 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 SGMS2Q8NHU3 365 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 NRIP2Q9BQI9 281 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 AICDAQ9GZX7 198 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 MRPL16Q9NX20 251 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 KCNE5Q9UJ90 142 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 CARHSP1Q9Y2V2 147 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 SLC45A1Q9Y2W3 748 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 F3P13726 295 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 OR9G4Q8NGQ1 327 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ZNF668Q96K58 619 aaPredicted RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ORAI2Q96SN7 254 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 PRO1933Q9H354 126 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 TBL2Q9Y4P3 447 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 FAM90A26D6RGX4 464 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 SP1P08047 785 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 FBLP22087 321 aaKnown RBP4.36□□□□□ -1.71
CSMD3-201ENST00000297405 IP6K3Q96PC2 410 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ATOH8Q96SQ7 321 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 ZPBPQ9BS86 351 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 LTBP4Q8N2S1 1624 aa4.36□□□□□ -1.71
CSMD3-201ENST00000297405 A0A1W2PNV4 684 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 NKX6-3A6NJ46 265 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 FURINP09958 794 aa4.35□□□□□ -1.71
CSMD3-201ENST00000297405 CSNK1DP48730 415 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms