RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TMEM65Q6PI78 240 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 CRIP3Q6Q6R5 217 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 SEMA6DQ8NFY4 1073 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 OR10K1Q8NGX5 313 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 OR6K3Q8NGY3 331 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 COQ8AQ8NI60 647 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 FBXW5Q969U6 566 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 ALKBH3Q96Q83 286 aaPredicted RBP13.47□□□□□ -0.25
CCDC40-202ENST00000374876 FN3KRPQ9HA64 309 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 PRRG2O14669 202 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 SYNGR3O43761 229 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 DUS4LO95620 317 aaKnown RBP13.47□□□□□ -0.25
CCDC40-202ENST00000374876 B4GALT1P15291 398 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 CRYGSP22914 178 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 LRRC37A5PQ49AS3 106 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 ZNF774Q6NX45 483 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 KCTD9Q7L273 389 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 SLC51BQ86UW2 128 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 OR1F12Q8NHA8 337 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 ST6GALNAC5Q9BVH7 336 aa13.47□□□□□ -0.25
CCDC40-202ENST00000374876 FASNP49327 2511 aaKnown RBP13.46□□□□□ -0.25
CCDC40-202ENST00000374876 MYO7BQ6PIF6 2116 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 A0A0D9SG52 128 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 SHOXO15266 292 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 CRYZL1O95825 349 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 CPT2P23786 658 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 MPGP29372 298 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 CALCRP30988 508 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 OR3A2P47893 321 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 ABLIM2Q6H8Q1 611 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 C11orf87Q6NUJ2 197 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 RFPL4BQ6ZWI9 263 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 SLC16A14Q7RTX9 510 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 TMEM17Q86X19 198 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 PPP1R1CQ8WVI7 109 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 REEP6Q96HR9 211 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 ADGRG7Q96K78 797 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.46□□□□□ -0.25
CCDC40-202ENST00000374876 GPR173Q9NS66 373 aa13.46□□□□□ -0.25
CCDC40-202ENST00000374876 KIAA1549Q9HCM3 1950 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 MYO18BQ8IUG5 2567 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 SPDEFO95238 335 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 SLC25A4P12235 298 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 NPY4RP50391 375 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 LHX2P50458 406 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 ARL6IP1Q15041 203 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 RPRMLQ8N4K4 120 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 OR2AE1Q8NHA4 323 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 WDYHV1Q96HA8 205 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 PECRQ9BY49 303 aa13.46□□□□□ -0.26
CCDC40-202ENST00000374876 HIVEP3Q5T1R4 2406 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 HELZ2Q9BYK8 2649 aaKnown RBP13.45□□□□□ -0.26
CCDC40-202ENST00000374876 hCG_1807616A0A1W2PRN6 198 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 DHRS7CA6NNS2 312 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 POM121CA8CG34 1229 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 FOXI3A8MTJ6 420 aaPredicted RBP13.45□□□□□ -0.26
CCDC40-202ENST00000374876 SERPINE3A8MV23 424 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 CCL21O00585 134 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 ACTL6AO96019 429 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 LCATP04180 440 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 NMBP08949 121 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 ZNF32P17041 273 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 CA7P43166 264 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 SNU13P55769 128 aaKnown RBP13.45□□□□□ -0.26
CCDC40-202ENST00000374876 MTCP1P56278 107 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 TAS2R46P59540 309 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 TMEM128Q5BJH2 165 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 ZNF660Q6AZW8 331 aaPredicted RBP13.45□□□□□ -0.26
CCDC40-202ENST00000374876 CSNK2A3Q8NEV1 391 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 LRRC20Q8TCA0 184 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 RBPMSQ93062 196 aaKnown RBP13.45□□□□□ -0.26
CCDC40-202ENST00000374876 CPNE4Q96A23 557 aaPredicted RBP13.45□□□□□ -0.26
CCDC40-202ENST00000374876 SPSB1Q96BD6 273 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 CYYR1Q96J86 154 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 SCGB3A2Q96PL1 93 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 FOXB1Q99853 325 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 TM2D1Q9BX74 207 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 TNFSF18Q9UNG2 199 aa13.45□□□□□ -0.26
CCDC40-202ENST00000374876 TMA7Q9Y2S6 64 aaKnown RBP13.45□□□□□ -0.26
CCDC40-202ENST00000374876 OR2F2O95006 317 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 TMEM225BP0DP42 221 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 ZNF250P15622 560 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 ACKR3P25106 362 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 HTR5AP47898 357 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 ATP1B3P54709 279 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 CASP6P55212 293 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 SRSF1Q07955 248 aaKnown RBP eCLIP13.44□□□□□ -0.26
CCDC40-202ENST00000374876 OR2F1Q13607 317 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 CEACAM16Q2WEN9 425 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 PLXDC2Q6UX71 529 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 AKR7LQ8NHP1 331 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 CPNE2Q96FN4 548 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-202ENST00000374876 ERRFI1Q9UJM3 462 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-202ENST00000374876 GPR132Q9UNW8 380 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 TIMM10BQ9Y5J6 103 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 KANTRA0A1W2PQU2 76 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 C5orf51A6NDU8 294 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 OR6C6A6NF89 314 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 EEF1E1-BLOC1S5C9J1V9 151 aa13.44□□□□□ -0.26
CCDC40-202ENST00000374876 PATE4P0C8F1 98 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms