RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 DCAF10Q5QP82 559 aa13.83□□□□□ -0.19
PTPRF-201ENST00000359947 LIMS2Q7Z4I7 341 aa13.83□□□□□ -0.19
PTPRF-201ENST00000359947 TMUB1Q9BVT8 246 aa13.83□□□□□ -0.19
PTPRF-201ENST00000359947 H7BYZ3 331 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 HLXQ14774 488 aaPredicted RBP13.83□□□□□ -0.2
PTPRF-201ENST00000359947 C4orf17Q53FE4 359 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 OR4F17Q8NGA8 305 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 CDCA4Q9BXL8 241 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 C9orf172C9J069 976 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 MS4A18H0YCH9 400 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 ZNHIT1O43257 154 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 MS4A18Q3C1V0 323 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 CD276Q5ZPR3 534 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 ADAM5Q6NVV9 412 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 OR4C16Q8NGL9 310 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 TINAGQ9UJW2 476 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 HSPB2A8KAH6 182 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 EPXP11678 715 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 ERVFC1-1P60608 527 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 HSPB2Q16082 182 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 TIPARPQ7Z3E1 657 aaKnown RBP13.83□□□□□ -0.2
PTPRF-201ENST00000359947 SPSB1Q96BD6 273 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 EID2BQ96D98 161 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 SERPINE3A8MV23 424 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 NKX2-8O15522 239 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 SPP1P10451 314 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 FNDC7Q5VTL7 733 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 OR2M7Q8NG81 312 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 COX14Q96I36 57 aa13.83□□□□□ -0.2
PTPRF-201ENST00000359947 KCNE1BA0A087WTH5 132 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 HAX1O00165 279 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 MMP7P09237 267 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 TMPRSS3P57727 454 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 SKP2Q13309 424 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 OR1B1Q8NGR6 318 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 MBP02144 154 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 SLC25A5P05141 298 aaKnown RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 BRS3P32247 399 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 CDKN2AP42771 156 aaKnown RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 CNN1P51911 297 aaKnown RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 LRRTM1Q86UE6 522 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 OR5AP2Q8NGF4 316 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 RPS4XP62701 263 aaKnown RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 LFNGQ8NES3 379 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 OR13D1Q8NGV5 346 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 DYNLRB2Q8TF09 96 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 VSTM2LQ96N03 204 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 NTMQ9P121 344 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 FOXJ3Q9UPW0 622 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 RAC3P60763 192 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 CCDC190Q86UF4 302 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 BTF3L4Q96K17 158 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 UCN2Q96RP3 112 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 LSM2Q9Y333 95 aaKnown RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 PCDHGA9Q9Y5G4 932 aaKnown RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 C16orf97H3BN30 126 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 MPGP29372 298 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 MS4A7Q9GZW8 240 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 KCNMB2Q9Y691 235 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 TOX3O15405 576 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 SPINK4O60575 86 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 LILRB4Q8NHJ6 448 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 C2orf50Q96LR7 162 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 SMIM7Q9BQ49 75 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 ZNF768Q9H5H4 540 aaKnown RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 MSL2Q9HCI7 577 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 SCN2AQ99250 2005 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 CABIN1Q9Y6J0 2220 aa13.82□□□□□ -0.2
PTPRF-201ENST00000359947 MDC1Q14676 2089 aaKnown RBP13.82□□□□□ -0.2
PTPRF-201ENST00000359947 KIR2DL1P43626 348 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-201ENST00000359947 SLC37A1P57057 533 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 C1QL3Q5VWW1 255 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 LYG2Q86SG7 212 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 TRBV23-1A0A0A0MS06 115 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 CDIPTO14735 213 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 PNLIPP16233 465 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 ZNF683Q8IZ20 524 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 GRAMD2BQ96HH9 432 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 IGLV3-16A0A075B6K0 115 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 CTLA4P16410 223 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 OR52L2PQ8NGH6 319 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 TMEM272A0A1B0GTI8 110 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 C5orf67F2Z3F1 127 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 ACTL6AO96019 429 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 ZNF425Q6IV72 752 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 RELL2Q8NC24 303 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-201ENST00000359947 RAB7AP51149 207 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 SLC25A30Q5SVS4 291 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 RIMKLAQ8IXN7 391 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 PECRQ9BY49 303 aa13.81□□□□□ -0.2
PTPRF-201ENST00000359947 FABP9Q0Z7S8 132 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 ECSCRQ19T08 205 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 ISXQ2M1V0 245 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 FFAR4Q5NUL3 377 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 PRR35P0CG20 571 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 FAM3AP98173 230 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 SCARB1Q8WTV0 552 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 TAAR5O14804 337 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 Q1RN00 199 aa13.8□□□□□ -0.2
PTPRF-201ENST00000359947 D2HGDHQ8N465 521 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms