RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 TBX15Q96SF7 602 aa10.22□□□□□ -0.77
PTPN4-201ENST00000263708 CLDN18P56856 261 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 CACNG7P62955 275 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 RELBQ01201 579 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 TWIST1Q15672 202 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 METRNLQ641Q3 311 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 SEZ6L2Q6UXD5 910 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 RFESDQ8TAC1 157 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 SLCO1C1Q9NYB5 712 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 MED19A0JLT2 244 aaPredicted RBP10.21□□□□□ -0.77
PTPN4-201ENST00000263708 D2HGDHQ8N465 521 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 LPAR2Q9HBW0 351 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 MASP2O00187 686 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 RPL29P47914 159 aaKnown RBP10.21□□□□□ -0.77
PTPN4-201ENST00000263708 EAF1Q96JC9 268 aaPredicted RBP10.21□□□□□ -0.77
PTPN4-201ENST00000263708 SDF2Q99470 211 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 A6NDN8 102 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 HMGN4O00479 90 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 SLC25A30Q5SVS4 291 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 LSMEM1Q8N8F7 131 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 NUDT10Q8NFP7 164 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 MAFAQ8NHW3 353 aaPredicted RBP10.21□□□□□ -0.77
PTPN4-201ENST00000263708 NUDT11Q96G61 164 aa10.21□□□□□ -0.77
PTPN4-201ENST00000263708 ATF1P18846 271 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 CD226Q15762 336 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 TMEM241Q24JQ0 296 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 LRRC26Q2I0M4 334 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 CCSMST1Q4G0I0 132 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 ZNF343Q6P1L6 599 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 MRGPREQ86SM8 312 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 ELSPBP1Q96BH3 223 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 FOXC2Q99958 501 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 TMEM202A6NGA9 273 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 M0R143 59 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 LPAR6P43657 344 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 PTX4Q96A99 478 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 GSTZ1O43708 216 aaPredicted RBP10.21□□□□□ -0.78
PTPN4-201ENST00000263708 HIST1H1EP10412 219 aaKnown RBP10.21□□□□□ -0.78
PTPN4-201ENST00000263708 GUCA2BQ16661 112 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 WDR73Q6P4I2 378 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 DERL3Q96Q80 235 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 NEURL2Q9BR09 285 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 ASCL3Q9NQ33 180 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 TNFRSF10CO14798 259 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 LANCL1O43813 399 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 P01737 135 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 ERVS71-1P61550 626 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 FAM78BQ5VT40 261 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 SAXO2Q658L1 398 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 C6orf201Q7Z4U5 140 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.21□□□□□ -0.78
PTPN4-201ENST00000263708 CES1P1Q9UKY3 287 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 MYO16Q9Y6X6 1858 aa10.21□□□□□ -0.78
PTPN4-201ENST00000263708 OR2A25A4D2G3 310 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 TCL1AP56279 114 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 UBE2L3P68036 154 aaKnown RBP10.2□□□□□ -0.78
PTPN4-201ENST00000263708 TMEM211Q6ICI0 200 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 C20orf196Q8IYI0 205 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 GABRG3Q99928 467 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 WDR13Q9H1Z4 485 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 ZFC3H1O60293 1989 aaKnown RBP10.2□□□□□ -0.78
PTPN4-201ENST00000263708 H0YIG0 161 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 TCTN3Q6NUS6 607 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 STAC2Q6ZMT1 411 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 OR2G2Q8NGZ5 317 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 C16orf52Q8NHV5 167 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 PHYHIPLQ96FC7 376 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 RSG1Q9BU20 258 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 IGKV3OR2-268A0A0C4DH90 116 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 EPXP11678 715 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 H3BMH7 237 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 DDOSTP39656 456 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 CTU2Q2VPK5 515 aaKnown RBP10.2□□□□□ -0.78
PTPN4-201ENST00000263708 OR13F1Q8NGS4 319 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 THAP10Q9P2Z0 257 aaPredicted RBP10.2□□□□□ -0.78
PTPN4-201ENST00000263708 PLEKHB1Q9UF11 243 aaPredicted RBP10.2□□□□□ -0.78
PTPN4-201ENST00000263708 SHISA8B8ZZ34 492 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 BCL2L11O43521 198 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 LIPAP38571 399 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 SUCLG1P53597 346 aaKnown RBP10.2□□□□□ -0.78
PTPN4-201ENST00000263708 ROM1Q03395 351 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 TDHQ8IZJ6 230 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 OR10A7Q8NGE5 316 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 ABHD3Q8WU67 409 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 SMIM19Q96E16 107 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 MMP17Q9ULZ9 603 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 MFSD2BA6NFX1 497 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 SLC37A1P57057 533 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 RIGQ13278 110 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 GPNMBQ14956 572 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 HERPUD1Q15011 391 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 KCNMB1Q16558 191 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 C1QBP02746 253 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 GABRB1P18505 474 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 GNG3P63215 75 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 MS4A6EQ96DS6 147 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 hADV38S2A0JD32 116 aa10.2□□□□□ -0.78
PTPN4-201ENST00000263708 PTBP1P26599 531 aaKnown RBP eCLIP10.2□□□□□ -0.788e-17■■■■■ 45.4
PTPN4-201ENST00000263708 RNPS1Q15287 305 aaKnown RBP10.2□□□□□ -0.78
PTPN4-201ENST00000263708 RAB1CQ92928 201 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms