RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PRDM6Q9NQX0 595 aa13.87□□□□□ -0.19
PTPRF-201ENST00000359947 OR5V1Q9UGF6 321 aa13.87□□□□□ -0.19
PTPRF-201ENST00000359947 AMMECR1Q9Y4X0 333 aaPredicted RBP13.87□□□□□ -0.19
PTPRF-201ENST00000359947 hADV38S2A0JD32 116 aa13.87□□□□□ -0.19
PTPRF-201ENST00000359947 ZNF727A8MUV8 499 aa13.87□□□□□ -0.19
PTPRF-201ENST00000359947 NKX2-2O95096 273 aa13.87□□□□□ -0.19
PTPRF-201ENST00000359947 COX5AP20674 150 aa13.87□□□□□ -0.19
PTPRF-201ENST00000359947 DHODHQ02127 395 aa13.87□□□□□ -0.19
PTPRF-201ENST00000359947 PCGF1Q9BSM1 259 aa13.87□□□□□ -0.19
PTPRF-201ENST00000359947 TGIF2Q9GZN2 237 aa13.87□□□□□ -0.19
PTPRF-201ENST00000359947 IGHV3OR15-7A0A075B7D8 119 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 TGIF2LXQ8IUE1 241 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 OR5M8Q8NGP6 311 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 TSPAN32Q96QS1 320 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 OR8B4Q96RC9 309 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 RHNO1Q9BSD3 238 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 CTDSP1Q9GZU7 261 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 CXXC4Q9H2H0 198 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 ARL2-SNX15V9GYD0 113 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 SPINT1O43278 529 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 FAHD2BQ6P2I3 314 aaPredicted RBP13.86□□□□□ -0.19
PTPRF-201ENST00000359947 C6orf201Q7Z4U5 140 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 FAHD2AQ96GK7 314 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 FTH1P19P0C7X4 201 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 ZNF17P17021 662 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 GP2P55259 537 aaKnown RBP13.86□□□□□ -0.19
PTPRF-201ENST00000359947 RXFP4Q8TDU9 374 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 FGF11Q92914 225 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 CCL3P10147 92 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 PSMB6P28072 239 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 FBXO8Q9NRD0 319 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 E5RGE8 158 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 DUS4LO95620 317 aaKnown RBP13.86□□□□□ -0.19
PTPRF-201ENST00000359947 OR1A1Q9P1Q5 309 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 NSG2Q9Y328 171 aa13.86□□□□□ -0.19
PTPRF-201ENST00000359947 ZNF831Q5JPB2 1677 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 OR2C1O95371 312 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 CALCRP30988 508 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 WDR38Q5JTN6 314 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 OR5D13Q8NGL4 314 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 TMEM171Q8WVE6 324 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 GON7Q9BXV9 100 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 PCOLCE2Q9UKZ9 415 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 DHRS3O75911 302 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 JTBO76095 146 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 HRASP01112 189 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 CEACAM3P40198 252 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 GGTLC2Q14390 218 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 WFDC3Q8IUB2 231 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 OR2M5A3KFT3 312 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 C21orf140B9A014 251 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 PLPP3O14495 311 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 PDGFBP01127 241 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-201ENST00000359947 SBK3P0C264 359 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 LGALS7P47929 136 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 ABI3BPQ7Z7G0 1075 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 C14orf79Q96F83 325 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 ARHGDIGQ99819 225 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 DUSP15Q9H1R2 295 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-201ENST00000359947 TRAV38-1A0A0B4J264 116 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 COL19A1Q14993 1142 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 RPUSD3Q6P087 351 aaKnown RBP13.85□□□□□ -0.19
PTPRF-201ENST00000359947 PTHLHP12272 177 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 RASL11BQ9BPW5 248 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 K7ESF4 209 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 HRKO00198 91 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 SULT1A3P0DMM9 295 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 SULT1A4P0DMN0 295 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 GNPNAT1Q96EK6 184 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-201ENST00000359947 ABHD14AQ9BUJ0 271 aa13.85□□□□□ -0.19
PTPRF-201ENST00000359947 TCRBV5S2A0A599 114 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 PRF1P14222 555 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 OR2F1Q13607 317 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 GPNMBQ14956 572 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 ETFDHQ16134 617 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 C1orf53Q5VUE5 145 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 UMAD1C9J7I0 102 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 PPP5D1E7EU14 171 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 ORM2P19652 201 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 LYZP61626 148 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 ALG14Q96F25 216 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 ZNF416Q9BWM5 594 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 OR3A1P47881 315 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 SELENOPP49908 381 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 DHRS7BQ6IAN0 325 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-201ENST00000359947 MOGAT1Q96PD6 335 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 RYDENQ9NUL5 291 aaKnown RBP13.84□□□□□ -0.19
PTPRF-201ENST00000359947 LPAR6P43657 344 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 BCL2L2Q92843 193 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-201ENST00000359947 SEBOXQ9HB31 216 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-201ENST00000359947 AMDHD2Q9Y303 409 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 HOXC4P09017 264 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-201ENST00000359947 GABARAPL1Q9H0R8 117 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 PTGFRP43088 359 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 ZNF239Q16600 458 aaKnown RBP13.84□□□□□ -0.19
PTPRF-201ENST00000359947 VN1R4Q7Z5H5 301 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 SIGLEC7Q9Y286 467 aa13.84□□□□□ -0.19
PTPRF-201ENST00000359947 SFTPCP11686 197 aa13.83□□□□□ -0.19
PTPRF-201ENST00000359947 CD80P33681 288 aa13.83□□□□□ -0.19
PTPRF-201ENST00000359947 INSL4Q14641 139 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms