RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 IGHA1P01876 353 aa13.25□□□□□ -0.29
CHD4-201ENST00000357008 TMEM240Q5SV17 173 aa13.25□□□□□ -0.29
CHD4-201ENST00000357008 CNTD2Q9H8S5 307 aa13.25□□□□□ -0.29
CHD4-201ENST00000357008 M0R1B8 84 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 TMEM33P57088 247 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 PNRC1Q12796 327 aaPredicted RBP13.24□□□□□ -0.29
CHD4-201ENST00000357008 C8orf82Q6P1X6 216 aaPredicted RBP13.24□□□□□ -0.29
CHD4-201ENST00000357008 C6orf201Q7Z4U5 140 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 ZNF707Q96C28 371 aaPredicted RBP13.24□□□□□ -0.29
CHD4-201ENST00000357008 HEXAP06865 529 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 IGFBP7Q16270 282 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 HES4Q9HCC6 221 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 A0A1W2PNV4 684 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 LMO7DNF2Z398 122 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 PRRG2O14669 202 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 TRAF4Q9BUZ4 470 aaPredicted RBP13.24□□□□□ -0.29
CHD4-201ENST00000357008 MIXL1Q9H2W2 232 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 SIRT3Q9NTG7 399 aaPredicted RBP13.24□□□□□ -0.29
CHD4-201ENST00000357008 ELOA3CA0A087WX78 387 aaPredicted RBP13.24□□□□□ -0.29
CHD4-201ENST00000357008 LINC00862A6NCI5 91 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 M0R1X1 148 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 LIMS2Q7Z4I7 341 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 ETFBKMTQ8IXQ9 262 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 PRO1933Q9H354 126 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 PDCD6O75340 191 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 OPN1MWP04001 364 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 OPN1MW2P0DN77 364 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 OPN1MW3P0DN78 364 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 CXCL3P19876 107 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 RPL13AP40429 203 aaKnown RBP13.24□□□□□ -0.29
CHD4-201ENST00000357008 PMS2P11Q13670 270 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 SURF2Q15527 256 aaPredicted RBP13.24□□□□□ -0.29
CHD4-201ENST00000357008 ZNF141Q15928 474 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 ZNF683Q8IZ20 524 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 C17orf78Q8N4C9 275 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 RNF24Q9Y225 148 aa13.24□□□□□ -0.29
CHD4-201ENST00000357008 COL16A1Q07092 1604 aaPredicted RBP13.23□□□□□ -0.29
CHD4-201ENST00000357008 OR5AC1P0C628 307 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 YBX1P67809 324 aaKnown RBP13.23□□□□□ -0.29
CHD4-201ENST00000357008 LINC01555Q8NAE3 123 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 RBFOX3A6NFN3 312 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 TAAR9Q96RI9 348 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 LRFN3Q9BTN0 628 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 TMPRSS13Q9BYE2 586 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 WDR61Q9GZS3 305 aaKnown RBP13.23□□□□□ -0.29
CHD4-201ENST00000357008 SHROOM3Q8TF72 1996 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 KNL1Q8NG31 2342 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 ALG1L2C9J202 215 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 CST2P09228 141 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 CEACAM6P40199 344 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 OR3A4PP47883 348 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 SLC16A13Q7RTY0 426 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 MYPOPQ86VE0 399 aaPredicted RBP13.23□□□□□ -0.29
CHD4-201ENST00000357008 ZNF764Q96H86 408 aaPredicted RBP13.23□□□□□ -0.29
CHD4-201ENST00000357008 TAAR3PQ9P1P4 343 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 SLC45A2Q9UMX9 530 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 GLULP15104 373 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 ZNF770Q6IQ21 691 aaPredicted RBP13.23□□□□□ -0.29
CHD4-201ENST00000357008 C20orf196Q8IYI0 205 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 C11orf42Q8N5U0 333 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 CTSVO60911 334 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 NGFP01138 241 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 LPAR6P43657 344 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 SLC25A30Q5SVS4 291 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 TP53I13Q8NBR0 393 aaPredicted RBP13.23□□□□□ -0.29
CHD4-201ENST00000357008 PHF7Q9BWX1 381 aaPredicted RBP13.23□□□□□ -0.29
CHD4-201ENST00000357008 SEC11CQ9BY50 192 aa13.23□□□□□ -0.29
CHD4-201ENST00000357008 DUXBA0A1W2PPF3 345 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 HRASP01112 189 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 CTSDP07339 412 aaPredicted RBP13.22□□□□□ -0.29
CHD4-201ENST00000357008 RPL29P47914 159 aaKnown RBP13.22□□□□□ -0.29
CHD4-201ENST00000357008 METAP1P53582 386 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 IL24Q13007 206 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 PDCD1Q15116 288 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 RGS7BPQ6MZT1 257 aaPredicted RBP13.22□□□□□ -0.29
CHD4-201ENST00000357008 OR6S1Q8NH40 331 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 OR2T6Q8NHC8 308 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 FGF14Q92915 247 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 OR2A5Q96R48 311 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 VN1R1Q9GZP7 353 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 MRM2Q9UI43 246 aaKnown RBP13.22□□□□□ -0.29
CHD4-201ENST00000357008 SHISA8B8ZZ34 492 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 FCN1O00602 326 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 CRHP06850 196 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 NAT1P18440 290 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 SPATA46Q5T0L3 261 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 TIPARPQ7Z3E1 657 aaKnown RBP13.22□□□□□ -0.29
CHD4-201ENST00000357008 GVQW1Q8N7I0 195 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 BCL2L2Q92843 193 aaPredicted RBP13.22□□□□□ -0.29
CHD4-201ENST00000357008 TEX50A0A1B0GTY4 177 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 ATP6V1FQ16864 119 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 AWAT1Q58HT5 328 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 TMEM56Q96MV1 263 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 LRRC61Q9BV99 259 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 OPN4Q9UHM6 478 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 KIAA1324LA8MWY0 1029 aaPredicted RBP13.22□□□□□ -0.29
CHD4-201ENST00000357008 PLA2G10O15496 165 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 PTBP3O95758 552 aaKnown RBP13.22□□□□□ -0.29
CHD4-201ENST00000357008 ZNF250P15622 560 aa13.22□□□□□ -0.29
CHD4-201ENST00000357008 TIAL1Q01085 375 aaKnown RBP eCLIP13.22□□□□□ -0.291e-9■■■■□ 25.7
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms