RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	LIA1	P47120	325 aa	Known RBP	12.84	□□□□□ -0.35
BDF1	YLR399C	YGR273C	P53329	174 aa		12.84	□□□□□ -0.35
BDF1	YLR399C	YPL260W	Q08977	551 aa		12.84	□□□□□ -0.35
BDF1	YLR399C	SEC6	P32844	805 aa		12.83	□□□□□ -0.36
BDF1	YLR399C	CSE1	P33307	960 aa		12.83	□□□□□ -0.36
BDF1	YLR399C	PTP3	P40048	928 aa		12.83	□□□□□ -0.36
BDF1	YLR399C	YMR134W	P40207	237 aa		12.83	□□□□□ -0.36
BDF1	YLR399C	YLR053C	Q12026	108 aa		12.83	□□□□□ -0.36
BDF1	YLR399C	PFK1	P16861	987 aa	Known RBP	12.82	□□□□□ -0.36
BDF1	YLR399C	SNT1	P25357	1226 aa		12.82	□□□□□ -0.36
BDF1	YLR399C	NPT1	P39683	429 aa	Known RBP	12.82	□□□□□ -0.36
BDF1	YLR399C	DAK1	P54838	584 aa	Known RBP	12.82	□□□□□ -0.36
BDF1	YLR399C	YPR202W	Q08993	238 aa		12.82	□□□□□ -0.36
BDF1	YLR399C	MYO1	P08964	1928 aa		12.82	□□□□□ -0.36
BDF1	YLR399C	CNA1	P23287	553 aa		12.82	□□□□□ -0.36
BDF1	YLR399C	MGT1	P26188	188 aa		12.82	□□□□□ -0.36
BDF1	YLR399C	DBF4	P32325	704 aa		12.82	□□□□□ -0.36
BDF1	YLR399C	SPC42	P36094	363 aa		12.82	□□□□□ -0.36
BDF1	YLR399C	MAM33	P40513	266 aa		12.82	□□□□□ -0.36
BDF1	YLR399C	STB2	P46679	850 aa		12.82	□□□□□ -0.36
BDF1	YLR399C	IMD4	P50094	524 aa	Known RBP	12.82	□□□□□ -0.36
BDF1	YLR399C	ESBP6	P53918	673 aa		12.82	□□□□□ -0.36
BDF1	YLR399C	ICL1	P28240	557 aa	Predicted RBP	12.81	□□□□□ -0.36
BDF1	YLR399C	ICP55	P40051	511 aa		12.81	□□□□□ -0.36
BDF1	YLR399C	RSM26	P47141	266 aa		12.81	□□□□□ -0.36
BDF1	YLR399C	BCP1	Q06338	283 aa		12.81	□□□□□ -0.36
BDF1	YLR399C	NOP12	Q08208	459 aa	Known RBP	12.81	□□□□□ -0.36
BDF1	YLR399C	NYV1	Q12255	253 aa		12.81	□□□□□ -0.36
BDF1	YLR399C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	12.81	□□□□□ -0.36	not detected
BDF1	YLR399C	COB	P00163	385 aa		12.81	□□□□□ -0.36
BDF1	YLR399C	TUB1	P09733	447 aa	Known RBP	12.81	□□□□□ -0.36
BDF1	YLR399C	PET122	P10355	254 aa		12.81	□□□□□ -0.36
BDF1	YLR399C	URE2	P23202	354 aa	Known RBP	12.81	□□□□□ -0.36
BDF1	YLR399C	BRF1	P29056	596 aa		12.81	□□□□□ -0.36
BDF1	YLR399C	UTP11	P34247	250 aa	Predicted RBP	12.81	□□□□□ -0.36
BDF1	YLR399C	SET3	P36124	751 aa		12.81	□□□□□ -0.36
BDF1	YLR399C	ERC1	P38767	581 aa		12.81	□□□□□ -0.36
BDF1	YLR399C	PCF11	P39081	626 aa	Predicted RBP	12.81	□□□□□ -0.36
BDF1	YLR399C	VMA10	P48836	114 aa	Known RBP	12.81	□□□□□ -0.36
BDF1	YLR399C	ADE12	P80210	433 aa	Known RBP	12.81	□□□□□ -0.36
BDF1	YLR399C	RAT1	Q02792	1006 aa	Known RBP	12.81	□□□□□ -0.36
BDF1	YLR399C	DPH6	Q12429	685 aa		12.81	□□□□□ -0.36
BDF1	YLR399C	MSS116	P15424	664 aa	Known RBP	12.8	□□□□□ -0.36
BDF1	YLR399C	RAD14	P28519	371 aa		12.8	□□□□□ -0.36
BDF1	YLR399C	MRF1	P30775	413 aa	Predicted RBP	12.8	□□□□□ -0.36
BDF1	YLR399C	CUE2	P36075	443 aa	Known RBP	12.8	□□□□□ -0.36
BDF1	YLR399C	PDX3	P38075	228 aa	Known RBP	12.8	□□□□□ -0.36
BDF1	YLR399C	POP4	P38336	279 aa		12.8	□□□□□ -0.36
BDF1	YLR399C	TSC10	P38342	320 aa		12.8	□□□□□ -0.36
BDF1	YLR399C	PRK1	P40494	810 aa		12.8	□□□□□ -0.36
BDF1	YLR399C	PIP2	P52960	996 aa		12.8	□□□□□ -0.36
BDF1	YLR399C	PGA2	P53903	129 aa		12.8	□□□□□ -0.36
BDF1	YLR399C	PET112	P33893	541 aa		12.79	□□□□□ -0.36
BDF1	YLR399C	TGL4	P36165	910 aa		12.79	□□□□□ -0.36
BDF1	YLR399C	YJL107C	P42947	387 aa		12.79	□□□□□ -0.36
BDF1	YLR399C	ASI2	P53895	289 aa		12.79	□□□□□ -0.36
BDF1	YLR399C	IRC4	Q03036	179 aa		12.79	□□□□□ -0.36
BDF1	YLR399C	GPR1	Q12361	961 aa		12.79	□□□□□ -0.36
BDF1	YLR399C	HSF1	P10961	833 aa		12.79	□□□□□ -0.36
BDF1	YLR399C	YEL1	P34225	687 aa		12.79	□□□□□ -0.36
BDF1	YLR399C	BNA3	P47039	444 aa	Known RBP	12.79	□□□□□ -0.36
BDF1	YLR399C	SNF1	P06782	633 aa	Known RBP	12.78	□□□□□ -0.36
BDF1	YLR399C	SWI6	P09959	803 aa		12.78	□□□□□ -0.36
BDF1	YLR399C	SSC1	P0CS90	654 aa	Known RBP	12.78	□□□□□ -0.36
BDF1	YLR399C	ATR1	P13090	542 aa		12.78	□□□□□ -0.36
BDF1	YLR399C	PDC5	P16467	563 aa	Known RBP	12.78	□□□□□ -0.36
BDF1	YLR399C	THR1	P17423	357 aa	Known RBP	12.78	□□□□□ -0.36
BDF1	YLR399C	BUD23	P25627	275 aa	Predicted RBP	12.78	□□□□□ -0.36
BDF1	YLR399C	YSC84	P32793	468 aa		12.78	□□□□□ -0.36
BDF1	YLR399C	RAD54	P32863	898 aa		12.78	□□□□□ -0.36
BDF1	YLR399C	GAA1	P39012	614 aa		12.78	□□□□□ -0.36
BDF1	YLR399C	STL1	P39932	569 aa		12.78	□□□□□ -0.36
BDF1	YLR399C	YGR054W	P53235	642 aa	Known RBP	12.78	□□□□□ -0.36
BDF1	YLR399C	ULP1	Q02724	621 aa		12.78	□□□□□ -0.36
BDF1	YLR399C	YPR089W	O13585	888 aa		12.77	□□□□□ -0.36
BDF1	YLR399C	TEC1	P18412	486 aa		12.77	□□□□□ -0.36
BDF1	YLR399C	RGR1	P19263	1082 aa		12.77	□□□□□ -0.36
BDF1	YLR399C	TIF3	P34167	436 aa	Known RBP	12.77	□□□□□ -0.36
BDF1	YLR399C	UBP9	P39967	754 aa		12.77	□□□□□ -0.36
BDF1	YLR399C	CIK1	Q01649	594 aa		12.77	□□□□□ -0.36
BDF1	YLR399C	BUL2	Q03758	920 aa	Known RBP	12.77	□□□□□ -0.36
BDF1	YLR399C	CWC15	Q03772	175 aa	Known RBP	12.77	□□□□□ -0.36
BDF1	YLR399C	NTO1	Q12311	748 aa		12.77	□□□□□ -0.36
BDF1	YLR399C	VPS34	P22543	875 aa		12.77	□□□□□ -0.37
BDF1	YLR399C	BCK2	P33306	851 aa		12.77	□□□□□ -0.37
BDF1	YLR399C	DUG2	P38149	878 aa		12.77	□□□□□ -0.37
BDF1	YLR399C	SMF2	P38778	549 aa		12.77	□□□□□ -0.37
BDF1	YLR399C	NUP82	P40368	713 aa		12.77	□□□□□ -0.37
BDF1	YLR399C	RIC1	P40395	1056 aa		12.77	□□□□□ -0.37
BDF1	YLR399C	COS5	P47187	383 aa		12.77	□□□□□ -0.37
BDF1	YLR399C	PAN2	P53010	1115 aa	Predicted RBP	12.77	□□□□□ -0.37
BDF1	YLR399C	UTP8	P53276	713 aa	Known RBP	12.77	□□□□□ -0.37
BDF1	YLR399C	BIO4	P53630	237 aa		12.77	□□□□□ -0.37
BDF1	YLR399C	NSG2	P53898	299 aa		12.77	□□□□□ -0.37
BDF1	YLR399C	SEN54	Q02825	467 aa	Predicted RBP	12.77	□□□□□ -0.37
BDF1	YLR399C	ATG16	Q03818	150 aa		12.77	□□□□□ -0.37
BDF1	YLR399C	DBP5	P20449	482 aa	Known RBP	12.76	□□□□□ -0.37
BDF1	YLR399C	SIP2	P34164	415 aa	Known RBP	12.76	□□□□□ -0.37
BDF1	YLR399C	DSE1	P40077	573 aa		12.76	□□□□□ -0.37
BDF1	YLR399C	ASG1	P40467	964 aa		12.76	□□□□□ -0.37

Retrieved 100 of 5,963 RNA–protein pairs in 84.2 ms