RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	YKR051W	P36142	418 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	MRPL36	P36531	177 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	SHM2	P37291	469 aa	Known RBP	4.91	□□□□□ -1.62
VMA22	YHR060W	APM3	P38153	483 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	POA1	P38218	177 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	VPS8	P39702	1274 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	SSP120	P39931	234 aa	Known RBP	4.91	□□□□□ -1.62
VMA22	YHR060W	CEP3	P40969	608 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	SGM1	P47166	707 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	SAP4	P53036	818 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	MTC3	P53077	123 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	GSF2	Q04697	403 aa	Known RBP	4.91	□□□□□ -1.62
VMA22	YHR060W	SGD1	Q06132	899 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	GRC3	Q07845	632 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	SDH5	Q08230	162 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	HIF1	Q12373	385 aa		4.91	□□□□□ -1.62
VMA22	YHR060W	SNU66	Q12420	587 aa	Predicted RBP	4.91	□□□□□ -1.62
VMA22	YHR060W	NOT3	P06102	836 aa	Known RBP	4.9	□□□□□ -1.63
VMA22	YHR060W	SWI6	P09959	803 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	GFA1	P14742	717 aa	Known RBP	4.9	□□□□□ -1.63
VMA22	YHR060W	ACE2	P21192	770 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	YCL002C	P25565	263 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	AIM26	P32858	118 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	TYE7	P33122	291 aa	Predicted RBP	4.9	□□□□□ -1.63
VMA22	YHR060W	NUP120	P35729	1037 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	UME6	P39001	836 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	NOP16	P40007	231 aa	Known RBP	4.9	□□□□□ -1.63
VMA22	YHR060W	YJR039W	P47107	1121 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	ECL1	P48235	211 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	PUS4	P48567	403 aa	Known RBP	4.9	□□□□□ -1.63
VMA22	YHR060W	SFB2	P53953	876 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	YLR352W	Q06479	807 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	OMS1	Q06668	471 aa		4.9	□□□□□ -1.63
VMA22	YHR060W	CWC2	Q12046	339 aa	Predicted RBP	4.9	□□□□□ -1.63
VMA22	YHR060W	LEU2	P04173	364 aa	Predicted RBP	4.89	□□□□□ -1.63
VMA22	YHR060W	NUC1	P08466	329 aa		4.89	□□□□□ -1.63
VMA22	YHR060W	DGR2	P32330	852 aa		4.89	□□□□□ -1.63
VMA22	YHR060W	TGL1	P34163	548 aa		4.89	□□□□□ -1.63
VMA22	YHR060W	FLR1	P38124	548 aa		4.89	□□□□□ -1.63
VMA22	YHR060W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
VMA22	YHR060W	YKR011C	Q02209	353 aa		4.89	□□□□□ -1.63
VMA22	YHR060W	RCF1	Q03713	159 aa		4.89	□□□□□ -1.63
VMA22	YHR060W	CIA1	Q05583	330 aa		4.89	□□□□□ -1.63
VMA22	YHR060W	DCS2	Q12123	353 aa		4.89	□□□□□ -1.63
VMA22	YHR060W	SCM3	Q12334	223 aa		4.89	□□□□□ -1.63
VMA22	YHR060W	LPX1	Q12405	387 aa	Known RBP	4.89	□□□□□ -1.63
VMA22	YHR060W	HSP82	P02829	709 aa	Known RBP	4.88	□□□□□ -1.63
VMA22	YHR060W	MIS1	P09440	975 aa	Known RBP	4.88	□□□□□ -1.63
VMA22	YHR060W	MTF2	P10849	440 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	YCL049C	P25577	312 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	PGS1	P25578	521 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	CMK1	P27466	446 aa	Known RBP	4.88	□□□□□ -1.63
VMA22	YHR060W	STE13	P33894	931 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	ECM21	P38167	1117 aa	Known RBP	4.88	□□□□□ -1.63
VMA22	YHR060W	FAT1	P38225	669 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	BCD1	P38772	366 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	SSZ1	P38788	538 aa	Known RBP	4.88	□□□□□ -1.63
VMA22	YHR060W	NPP2	P39997	493 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	VID28	P40547	921 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	RAI1	P53063	387 aa	Known RBP	4.88	□□□□□ -1.63
VMA22	YHR060W	MTD1	Q02046	320 aa	Known RBP	4.88	□□□□□ -1.63
VMA22	YHR060W	YMR210W	Q03649	449 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	EIS1	Q05050	843 aa	Known RBP	4.88	□□□□□ -1.63
VMA22	YHR060W	YCG1	Q06680	1035 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	RCL1	Q08096	367 aa	Predicted RBP	4.88	□□□□□ -1.63
VMA22	YHR060W	VHS3	Q08438	674 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	THI21	Q08975	551 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	YOR022C	Q12204	715 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	SVS1	Q12254	260 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	YLR149C	Q99296	730 aa		4.88	□□□□□ -1.63
VMA22	YHR060W	VAS1	P07806	1104 aa	Known RBP	4.87	□□□□□ -1.63
VMA22	YHR060W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
VMA22	YHR060W	ATP12	P22135	325 aa		4.87	□□□□□ -1.63
VMA22	YHR060W	PAH1	P32567	862 aa		4.87	□□□□□ -1.63
VMA22	YHR060W	POL12	P38121	705 aa	Predicted RBP	4.87	□□□□□ -1.63
VMA22	YHR060W	YFL054C	P43549	646 aa		4.87	□□□□□ -1.63
VMA22	YHR060W	RBG2	P53295	368 aa	Known RBP	4.87	□□□□□ -1.63
VMA22	YHR060W	HDA1	P53973	706 aa		4.87	□□□□□ -1.63
VMA22	YHR060W	YLR287C	Q05881	355 aa		4.87	□□□□□ -1.63
VMA22	YHR060W	IMH1	Q06704	911 aa	Known RBP	4.87	□□□□□ -1.63
VMA22	YHR060W	NGL1	Q08213	363 aa	Known RBP	4.87	□□□□□ -1.63
VMA22	YHR060W	DFG16	Q99234	619 aa		4.87	□□□□□ -1.63
VMA22	YHR060W	GLT1	Q12680	2145 aa	Known RBP	4.87	□□□□□ -1.63
VMA22	YHR060W	SEM1	O94742	89 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	PHO5	P00635	467 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	FUR1	P18562	216 aa	Known RBP	4.86	□□□□□ -1.63
VMA22	YHR060W	SAN1	P22470	610 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	RAD16	P31244	790 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	NPR3	P38742	1146 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	YLF2	P38746	405 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	YHR202W	P38887	602 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	BEM4	P39011	633 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	SWD1	P39706	426 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	SCS2	P40075	244 aa	Known RBP	4.86	□□□□□ -1.63
VMA22	YHR060W	PSF2	P40359	213 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	IRC5	P43610	853 aa		4.86	□□□□□ -1.63
VMA22	YHR060W	CPR6	P53691	371 aa	Known RBP	4.86	□□□□□ -1.63
VMA22	YHR060W	NOP15	P53927	220 aa	Predicted RBP	4.86	□□□□□ -1.63
VMA22	YHR060W	MOT3	P54785	490 aa	Known RBP	4.86	□□□□□ -1.63
VMA22	YHR060W	ORC4	P54791	529 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 115 ms