RNA–Protein interactions for RNA: YDL060W

TSR1, Transcript of Protein required for processing of 20S pre-rRNA in the cytoplasm, yeast

Gene TSR1, Length 2,367 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TSR1	YDL060W	ALG2	P43636	503 aa		4.24	□□□□□ -1.73
TSR1	YDL060W	SNQ2	P32568	1501 aa	Known RBP	4.24	□□□□□ -1.73
TSR1	YDL060W	TSC11	P40061	1430 aa		4.24	□□□□□ -1.73
TSR1	YDL060W	RPS9A	O13516	197 aa	Known RBP	4.24	□□□□□ -1.73
TSR1	YDL060W	PCT1	P13259	424 aa		4.24	□□□□□ -1.73
TSR1	YDL060W	MCM10	P32354	571 aa		4.24	□□□□□ -1.73
TSR1	YDL060W	APL2	P36000	726 aa	Predicted RBP	4.24	□□□□□ -1.73
TSR1	YDL060W	SIC1	P38634	284 aa		4.24	□□□□□ -1.73
TSR1	YDL060W	CKB2	P38930	258 aa		4.24	□□□□□ -1.73
TSR1	YDL060W	YTM1	Q12024	460 aa	Predicted RBP	4.24	□□□□□ -1.73
TSR1	YDL060W	NPC2	Q12408	173 aa		4.24	□□□□□ -1.73
TSR1	YDL060W	PFK1	P16861	987 aa	Known RBP	4.23	□□□□□ -1.73
TSR1	YDL060W	STE13	P33894	931 aa		4.23	□□□□□ -1.73
TSR1	YDL060W	TOK1	P40310	691 aa		4.23	□□□□□ -1.73
TSR1	YDL060W	CEP3	P40969	608 aa		4.23	□□□□□ -1.73
TSR1	YDL060W	BNA1	P47096	177 aa		4.23	□□□□□ -1.73
TSR1	YDL060W	NIT3	P49954	291 aa		4.23	□□□□□ -1.73
TSR1	YDL060W	PHM6	Q05637	104 aa		4.23	□□□□□ -1.73
TSR1	YDL060W	WHI4	Q07655	649 aa	Known RBP	4.23	□□□□□ -1.73
TSR1	YDL060W	AIM39	Q08223	395 aa		4.23	□□□□□ -1.73
TSR1	YDL060W	ATG2	P53855	1592 aa		4.23	□□□□□ -1.73
TSR1	YDL060W	PAN1	P32521	1480 aa		4.23	□□□□□ -1.73
TSR1	YDL060W	SPC29	P33419	253 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	TFC3	P34111	1160 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	YEL1	P34225	687 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	YBR238C	P38330	731 aa	Known RBP	4.22	□□□□□ -1.73
TSR1	YDL060W	BMS1	Q08965	1183 aa	Known RBP	4.22	□□□□□ -1.73
TSR1	YDL060W	YDR056C	Q12025	205 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	NTO1	Q12311	748 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	KCS1	Q12494	1050 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	YOR1	P53049	1477 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	CDC31	P06704	161 aa	Known RBP	4.22	□□□□□ -1.73
TSR1	YDL060W	DCG1	P32460	244 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	YIL108W	P40483	696 aa	Known RBP	4.22	□□□□□ -1.73
TSR1	YDL060W	URM1	P40554	99 aa	Predicted RBP	4.22	□□□□□ -1.73
TSR1	YDL060W	SRB7	P47822	140 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	PHO23	P50947	330 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	PUS2	P53167	370 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	PAP2	P53632	584 aa	Known RBP	4.22	□□□□□ -1.73
TSR1	YDL060W	BUL2	Q03758	920 aa	Known RBP	4.22	□□□□□ -1.73
TSR1	YDL060W	PNS1	Q12412	539 aa		4.22	□□□□□ -1.73
TSR1	YDL060W	PDR15	Q04182	1529 aa	Known RBP	4.22	□□□□□ -1.73
TSR1	YDL060W	CHS3	P29465	1165 aa		4.21	□□□□□ -1.73
TSR1	YDL060W	TYE7	P33122	291 aa	Predicted RBP	4.21	□□□□□ -1.73
TSR1	YDL060W	PCM1	P38628	557 aa	Known RBP	4.21	□□□□□ -1.73
TSR1	YDL060W	ACA1	P39970	489 aa		4.21	□□□□□ -1.73
TSR1	YDL060W	GZF3	P42944	551 aa	Known RBP	4.21	□□□□□ -1.73
TSR1	YDL060W	YKE2	P52553	114 aa		4.21	□□□□□ -1.73
TSR1	YDL060W	TAN1	P53072	289 aa	Predicted RBP	4.21	□□□□□ -1.73
TSR1	YDL060W	NPY1	P53164	384 aa		4.21	□□□□□ -1.73
TSR1	YDL060W	MEH1	Q02205	184 aa		4.21	□□□□□ -1.73
TSR1	YDL060W	GUD1	Q07729	489 aa		4.21	□□□□□ -1.73
TSR1	YDL060W	NEW1	Q08972	1196 aa	Known RBP	4.21	□□□□□ -1.73
TSR1	YDL060W	MSS18	P08593	268 aa		4.21	□□□□□ -1.74
TSR1	YDL060W	PMI40	P29952	429 aa	Known RBP	4.21	□□□□□ -1.74
TSR1	YDL060W	SWI3	P32591	825 aa		4.21	□□□□□ -1.74
TSR1	YDL060W	ESL1	P40456	1118 aa		4.21	□□□□□ -1.74
TSR1	YDL060W	ERR3	P42222	437 aa		4.21	□□□□□ -1.74
TSR1	YDL060W	TSR2	Q06672	205 aa	Known RBP	4.21	□□□□□ -1.74
TSR1	YDL060W	RVB2	Q12464	471 aa	Known RBP	4.21	□□□□□ -1.74
TSR1	YDL060W	RMP1	Q12530	201 aa		4.21	□□□□□ -1.74
TSR1	YDL060W	ULS1	Q08562	1619 aa		4.21	□□□□□ -1.74
TSR1	YDL060W	GEA1	P47102	1408 aa	Predicted RBP	4.21	□□□□□ -1.74
TSR1	YDL060W	ESC1	Q03661	1658 aa	Known RBP	4.2	□□□□□ -1.74
TSR1	YDL060W	PMA1	P05030	918 aa	Known RBP	4.2	□□□□□ -1.74
TSR1	YDL060W	HEM12	P32347	362 aa	Predicted RBP	4.2	□□□□□ -1.74
TSR1	YDL060W	AFR1	P33304	620 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	BIT2	P38346	545 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	MSE1	P48525	536 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	NCS6	P53088	359 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	AIM14	P53109	570 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	SPC110	P32380	944 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	ERT1	P38140	529 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	CAF16	P43569	289 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	MNN11	P46985	422 aa	Known RBP	4.2	□□□□□ -1.74
TSR1	YDL060W	EXG2	P52911	562 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	GRX3	Q03835	250 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	SSL1	Q04673	461 aa	Predicted RBP	4.2	□□□□□ -1.74
TSR1	YDL060W	VIP1	Q06685	1146 aa	Known RBP	4.2	□□□□□ -1.74
TSR1	YDL060W	GUP2	Q08929	609 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	UPC2	Q12151	913 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	MED1	Q12321	566 aa		4.2	□□□□□ -1.74
TSR1	YDL060W	DNF1	P32660	1571 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	BEM3	P32873	1128 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	DEF1	P35732	738 aa	Known RBP	4.19	□□□□□ -1.74
TSR1	YDL060W	MED8	P38304	223 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	TMA108	P40462	946 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	GYP8	P43570	497 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	IML2	P47031	731 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	GRC3	Q07845	632 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	ENB1	Q08299	606 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	IRC20	Q06554	1556 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	SMC4	Q12267	1418 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	RNA1	P11745	407 aa	Known RBP	4.19	□□□□□ -1.74
TSR1	YDL060W	DAL5	P15365	543 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	RPD3	P32561	433 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	ECM1	P39715	212 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	FAF1	P40546	346 aa	Predicted RBP	4.19	□□□□□ -1.74
TSR1	YDL060W	YIR014W	P40570	242 aa		4.19	□□□□□ -1.74
TSR1	YDL060W	QRI7	P43122	407 aa		4.19	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 21.8 ms