RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 CDHR2Q9BYE9 1310 aa11.09□□□□□ -0.63
TRIM28-214ENST00000600840 CACNA1FO60840 1977 aa11.09□□□□□ -0.63
TRIM28-214ENST00000600840 NEURL1BA8MQ27 555 aa11.09□□□□□ -0.63
TRIM28-214ENST00000600840 SLC10A3P09131 477 aa11.09□□□□□ -0.63
TRIM28-214ENST00000600840 TRIM27P14373 513 aa11.09□□□□□ -0.63
TRIM28-214ENST00000600840 TNIP1Q15025 636 aa11.09□□□□□ -0.63
TRIM28-214ENST00000600840 TBC1D10BQ4KMP7 808 aaPredicted RBP11.09□□□□□ -0.63
TRIM28-214ENST00000600840 KRT26Q7Z3Y9 468 aa11.09□□□□□ -0.63
TRIM28-214ENST00000600840 TTLL11Q8NHH1 800 aa11.09□□□□□ -0.63
TRIM28-214ENST00000600840 CCDC102AQ96A19 550 aa11.09□□□□□ -0.63
TRIM28-214ENST00000600840 PODXL2Q9NZ53 605 aa11.09□□□□□ -0.63
TRIM28-214ENST00000600840 F6X3S4 739 aa11.08□□□□□ -0.64
TRIM28-214ENST00000600840 H7C1W4 665 aa11.08□□□□□ -0.64
TRIM28-214ENST00000600840 UFL1O94874 794 aa11.08□□□□□ -0.64
TRIM28-214ENST00000600840 DDX58O95786 925 aaKnown RBP11.08□□□□□ -0.64
TRIM28-214ENST00000600840 CCDC152Q4G0S7 254 aa11.08□□□□□ -0.64
TRIM28-214ENST00000600840 BEND3Q5T5X7 828 aa11.08□□□□□ -0.64
TRIM28-214ENST00000600840 ATF7IPQ6VMQ6 1270 aa11.08□□□□□ -0.64
TRIM28-214ENST00000600840 C2orf69Q8N8R5 385 aa11.08□□□□□ -0.64
TRIM28-214ENST00000600840 GREM2Q9H772 168 aa11.08□□□□□ -0.64
TRIM28-214ENST00000600840 ASTN2O75129 1339 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-214ENST00000600840 KIF16BQ96L93 1317 aa11.08□□□□□ -0.64
TRIM28-214ENST00000600840 ZNF646O15015 1829 aaPredicted RBP11.07□□□□□ -0.64
TRIM28-214ENST00000600840 PSME4Q14997 1843 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 H7C1D1 291 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 PLIN1O60240 522 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 RLBP1P12271 317 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 CASP7P55210 303 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 CTSWP56202 376 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 FKBP5Q13451 457 aaPredicted RBP11.07□□□□□ -0.64
TRIM28-214ENST00000600840 RBM26Q5T8P6 1007 aaKnown RBP11.07□□□□□ -0.64
TRIM28-214ENST00000600840 ZKSCAN2Q63HK3 967 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 DNAAF4Q8WXU2 420 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 DPF2Q92785 391 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 GCC1Q96CN9 775 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 ANKIB1Q9P2G1 1089 aa11.07□□□□□ -0.64
TRIM28-214ENST00000600840 IPO8O15397 1037 aaKnown RBP11.06□□□□□ -0.64
TRIM28-214ENST00000600840 TBC1D8O95759 1140 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 VIL1P09327 827 aaKnown RBP11.06□□□□□ -0.64
TRIM28-214ENST00000600840 C20orf194Q5TEA3 1177 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 INTS3Q68E01 1043 aaKnown RBP11.06□□□□□ -0.64
TRIM28-214ENST00000600840 UBE3BQ7Z3V4 1068 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 TXNRD3Q86VQ6 643 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 RASAL3Q86YV0 1011 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 ANKRD18AQ8IVF6 992 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 LINS1Q8NG48 757 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 ZNF296Q8WUU4 475 aaPredicted RBP11.06□□□□□ -0.64
TRIM28-214ENST00000600840 EYA3Q99504 573 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 API5Q9BZZ5 524 aaKnown RBP11.06□□□□□ -0.64
TRIM28-214ENST00000600840 ZC3H12CQ9C0D7 883 aaKnown RBP11.06□□□□□ -0.64
TRIM28-214ENST00000600840 GGA1Q9UJY5 639 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 HDAC9Q9UKV0 1011 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 MINPP1Q9UNW1 487 aa11.06□□□□□ -0.64
TRIM28-214ENST00000600840 RRP1P56182 461 aaKnown RBP11.05□□□□□ -0.64
TRIM28-214ENST00000600840 GCKRQ14397 625 aa11.05□□□□□ -0.64
TRIM28-214ENST00000600840 FRAT1Q92837 279 aaPredicted RBP11.05□□□□□ -0.64
TRIM28-214ENST00000600840 MXD3Q9BW11 206 aa11.05□□□□□ -0.64
TRIM28-214ENST00000600840 SUPT16HQ9Y5B9 1047 aaKnown RBP11.05□□□□□ -0.64
TRIM28-214ENST00000600840 PAPPA2Q9BXP8 1791 aa11.05□□□□□ -0.64
TRIM28-214ENST00000600840 KLRK1P26718 216 aa11.04□□□□□ -0.64
TRIM28-214ENST00000600840 FXR1P51114 621 aaKnown RBP eCLIP11.04□□□□□ -0.643e-6■■■□□ 16.1
TRIM28-214ENST00000600840 NEXNQ0ZGT2 675 aa11.04□□□□□ -0.64
TRIM28-214ENST00000600840 PDE3AQ14432 1141 aa11.04□□□□□ -0.64
TRIM28-214ENST00000600840 DCPSQ96C86 337 aaKnown RBP11.04□□□□□ -0.64
TRIM28-214ENST00000600840 GMLQ99445 158 aa11.04□□□□□ -0.64
TRIM28-214ENST00000600840 BSDC1Q9NW68 430 aaPredicted RBP11.04□□□□□ -0.64
TRIM28-214ENST00000600840 GGA3Q9NZ52 723 aa11.04□□□□□ -0.64
TRIM28-214ENST00000600840 SCAF8Q9UPN6 1271 aaKnown RBP11.04□□□□□ -0.64
TRIM28-214ENST00000600840 UTYO14607 1347 aa11.04□□□□□ -0.64
TRIM28-214ENST00000600840 XDHP47989 1333 aa11.04□□□□□ -0.64
TRIM28-214ENST00000600840 SNAP23O00161 211 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 ALDH1L1O75891 902 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 CSF1RP07333 972 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 HSP90B1P14625 803 aaKnown RBP11.03□□□□□ -0.64
TRIM28-214ENST00000600840 ATP2B4P23634 1241 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 PKN2Q16513 984 aaKnown RBP11.03□□□□□ -0.64
TRIM28-214ENST00000600840 KIF4BQ2VIQ3 1234 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 MOB2Q70IA6 237 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 DZIP1LQ8IYY4 767 aaKnown RBP11.03□□□□□ -0.64
TRIM28-214ENST00000600840 TMEM57Q8N5G2 664 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 CLUAP1Q96AJ1 413 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 CDCA5Q96FF9 252 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 CDC5LQ99459 802 aaKnown RBP11.03□□□□□ -0.64
TRIM28-214ENST00000600840 PLA2G12BQ9BX93 195 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 USP44Q9H0E7 712 aa11.03□□□□□ -0.64
TRIM28-214ENST00000600840 POTEFA5A3E0 1075 aa11.02□□□□□ -0.65
TRIM28-214ENST00000600840 ZBTB7BO15156 539 aaPredicted RBP11.02□□□□□ -0.65
TRIM28-214ENST00000600840 ITGA6P23229 1130 aa11.02□□□□□ -0.65
TRIM28-214ENST00000600840 RPS12P25398 132 aaKnown RBP11.02□□□□□ -0.65
TRIM28-214ENST00000600840 CCT4P50991 539 aaKnown RBP11.02□□□□□ -0.65
TRIM28-214ENST00000600840 FOXO4P98177 505 aa11.02□□□□□ -0.65
TRIM28-214ENST00000600840 EPHA10Q5JZY3 1008 aa11.02□□□□□ -0.65
TRIM28-214ENST00000600840 RSBN1LQ6PCB5 846 aaPredicted RBP11.02□□□□□ -0.65
TRIM28-214ENST00000600840 FBXO46Q6PJ61 603 aaPredicted RBP11.02□□□□□ -0.65
TRIM28-214ENST00000600840 PANK1Q8TE04 598 aa11.02□□□□□ -0.65
TRIM28-214ENST00000600840 KAZALD1Q96I82 304 aa11.02□□□□□ -0.65
TRIM28-214ENST00000600840 SRCIN1Q9C0H9 1055 aa11.02□□□□□ -0.65
TRIM28-214ENST00000600840 A0A1B0GUL6 1792 aa11.02□□□□□ -0.65
TRIM28-214ENST00000600840 G3V3G9 751 aa11.01□□□□□ -0.65
TRIM28-214ENST00000600840 GPR25O00155 361 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms