RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 HSP90B1P14625 803 aaKnown RBP8.64□□□□□ -1.03
VPS53-213ENST00000572334 ATP2B4P23634 1241 aa8.64□□□□□ -1.03
VPS53-213ENST00000572334 FLIIQ13045 1269 aa8.64□□□□□ -1.03
VPS53-213ENST00000572334 SCARF1Q14162 830 aa8.64□□□□□ -1.03
VPS53-213ENST00000572334 GCKRQ14397 625 aa8.64□□□□□ -1.03
VPS53-213ENST00000572334 RGMBQ6NW40 437 aa8.64□□□□□ -1.03
VPS53-213ENST00000572334 CDCA5Q96FF9 252 aa8.64□□□□□ -1.03
VPS53-213ENST00000572334 GBA2Q9HCG7 927 aaPredicted RBP8.64□□□□□ -1.03
VPS53-213ENST00000572334 SCAF8Q9UPN6 1271 aaKnown RBP8.64□□□□□ -1.03
VPS53-213ENST00000572334 CCT4P50991 539 aaKnown RBP8.63□□□□□ -1.03
VPS53-213ENST00000572334 NOGQ13253 232 aa8.63□□□□□ -1.03
VPS53-213ENST00000572334 FAM161AQ3B820 660 aa8.63□□□□□ -1.03
VPS53-213ENST00000572334 DACT2Q5SW24 774 aa8.63□□□□□ -1.03
VPS53-213ENST00000572334 ANGEL2Q5VTE6 544 aaKnown RBP8.63□□□□□ -1.03
VPS53-213ENST00000572334 UBE3BQ7Z3V4 1068 aa8.63□□□□□ -1.03
VPS53-213ENST00000572334 PODNQ7Z5L7 613 aa8.63□□□□□ -1.03
VPS53-213ENST00000572334 DCPSQ96C86 337 aaKnown RBP8.63□□□□□ -1.03
VPS53-213ENST00000572334 CDC5LQ99459 802 aaKnown RBP8.63□□□□□ -1.03
VPS53-213ENST00000572334 STK31Q9BXU1 1019 aa8.63□□□□□ -1.03
VPS53-213ENST00000572334 MYOZ2Q9NPC6 264 aa8.63□□□□□ -1.03
VPS53-213ENST00000572334 PDE4DIPQ5VU43 2346 aa8.63□□□□□ -1.03
VPS53-213ENST00000572334 TNRC18O15417 2968 aaPredicted RBP8.62□□□□□ -1.03
VPS53-213ENST00000572334 PITPNM2Q9BZ72 1349 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 USP17L3A6NCW0 530 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 USP17L4A6NCW7 530 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 SNAP23O00161 211 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 CA12O43570 354 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 SLC10A3P09131 477 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 USP17L8P0C7I0 530 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 ITGA6P23229 1130 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 KIF23Q02241 960 aaPredicted RBP8.62□□□□□ -1.03
VPS53-213ENST00000572334 NBPF9Q3BBW0 867 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 USP17L1Q7RTZ2 530 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 DNAAF4Q8WXU2 420 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 BEGAINQ9BUH8 593 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 CHMP4AQ9BY43 222 aa8.62□□□□□ -1.03
VPS53-213ENST00000572334 F6X3S4 739 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 WNT10BO00744 389 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 RGS19P49795 217 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 FOXO4P98177 505 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 EXOSC9Q06265 439 aaKnown RBP8.61□□□□□ -1.03
VPS53-213ENST00000572334 NEXNQ0ZGT2 675 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 EPHA10Q5JZY3 1008 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 MOB2Q70IA6 237 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 RASAL3Q86YV0 1011 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 WDR63Q8IWG1 891 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 SULF1Q8IWU6 871 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 C2orf69Q8N8R5 385 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 LINS1Q8NG48 757 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 ZBED3Q96IU2 234 aaPredicted RBP8.61□□□□□ -1.03
VPS53-213ENST00000572334 CSRNP1Q96S65 589 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 MCOLN1Q9GZU1 580 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 MRS2Q9HD23 443 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 LEMD3Q9Y2U8 911 aa8.61□□□□□ -1.03
VPS53-213ENST00000572334 ARAP2Q8WZ64 1704 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 ZNF804BA4D1E1 1349 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 G3V3G9 751 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 ZNF157P51786 506 aaPredicted RBP8.6□□□□□ -1.03
VPS53-213ENST00000572334 CHRNDQ07001 517 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 FKBP5Q13451 457 aaPredicted RBP8.6□□□□□ -1.03
VPS53-213ENST00000572334 BEND3Q5T5X7 828 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 DCAF8Q5TAQ9 597 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 STRIP1Q5VSL9 837 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 PRAMEF18Q5VWM3 479 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 CCDC102AQ96A19 550 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 COA1Q9GZY4 146 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 RNF186Q9NXI6 227 aa8.6□□□□□ -1.03
VPS53-213ENST00000572334 SALL2Q9Y467 1007 aaPredicted RBP8.6□□□□□ -1.03
VPS53-213ENST00000572334 OTOFQ9HC10 1997 aa8.59□□□□□ -1.03
VPS53-213ENST00000572334 IGHMBP2P38935 993 aaKnown RBP8.59□□□□□ -1.03
VPS53-213ENST00000572334 CERS5Q8N5B7 392 aa8.59□□□□□ -1.03
VPS53-213ENST00000572334 SAGE1Q9NXZ1 904 aa8.59□□□□□ -1.03
VPS53-213ENST00000572334 PCDHAC2Q9Y5I4 1007 aa8.59□□□□□ -1.03
VPS53-213ENST00000572334 AOX1Q06278 1338 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 ZNF521Q96K83 1311 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 SSC5DA1L4H1 1573 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 CCDC85CA6NKD9 419 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 UBE2Q2LH0YL09 131 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 TAF5LO75529 589 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 TRPA1O75762 1119 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 SASH1O94885 1247 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 FKBP1BP68106 108 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 TTLL5Q6EMB2 1281 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 C15orf52Q6ZUT6 534 aaKnown RBP8.58□□□□□ -1.04
VPS53-213ENST00000572334 HELBQ8NG08 1087 aaPredicted RBP8.58□□□□□ -1.04
VPS53-213ENST00000572334 KAZALD1Q96I82 304 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 ANKRD2Q9GZV1 360 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 MYH16Q9H6N6 1097 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 CD209Q9NNX6 404 aa8.58□□□□□ -1.04
VPS53-213ENST00000572334 MYO3BQ8WXR4 1341 aa8.57□□□□□ -1.04
VPS53-213ENST00000572334 ANKRD18BA2A2Z9 1011 aa8.57□□□□□ -1.04
VPS53-213ENST00000572334 GTF2IP78347 998 aa8.57□□□□□ -1.04
VPS53-213ENST00000572334 DGKZQ13574 1117 aa8.57□□□□□ -1.04
VPS53-213ENST00000572334 KIAA0825Q8IV33 1275 aa8.57□□□□□ -1.04
VPS53-213ENST00000572334 ZNF594Q96JF6 807 aaPredicted RBP8.57□□□□□ -1.04
VPS53-213ENST00000572334 MPHOSPH8Q99549 860 aa8.57□□□□□ -1.04
VPS53-213ENST00000572334 HTTP42858 3142 aa8.57□□□□□ -1.04
VPS53-213ENST00000572334 ZNF316A6NFI3 1004 aaPredicted RBP8.56□□□□□ -1.04
VPS53-213ENST00000572334 GRM8O00222 908 aa8.56□□□□□ -1.04
VPS53-213ENST00000572334 IL1R1P14778 569 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms