RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	GOLGA8F	Q08AF8	430 aa		13.14	□□□□□ -0.31
CLN3-238	ENST00000569430	GOLGA8DP	Q0D2H9	430 aa		13.14	□□□□□ -0.31
CLN3-238	ENST00000569430	DHX37	Q8IY37	1157 aa	Known RBP	13.14	□□□□□ -0.31
CLN3-238	ENST00000569430	DBNDD2	Q9BQY9	259 aa		13.14	□□□□□ -0.31
CLN3-238	ENST00000569430	CRACR2A	Q9BSW2	395 aa		13.14	□□□□□ -0.31
CLN3-238	ENST00000569430	CD163L1	Q9NR16	1453 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	CDKL5	O76039	1030 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	SUCLG2	Q96I99	432 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	SRRT	Q9BXP5	876 aa	Known RBP	13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	FLT4	P35916	1363 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	PPL	O60437	1756 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	TIMM10	P62072	90 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	LMBR1L	Q6UX01	489 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	GPATCH11	Q8N954	259 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	MAP4K1	Q92918	833 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	TLR7	Q9NYK1	1049 aa	Known RBP	13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	ZNF202	O95125	648 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	STX17	P56962	302 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	ETF1	P62495	437 aa	Known RBP	13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	PPP2R3A	Q06190	1150 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	PGBD1	Q96JS3	809 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	ALG1	Q9BT22	464 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	TBC1D2B	Q9UPU7	963 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	PIK3C2B	O00750	1634 aa		13.13	□□□□□ -0.31
CLN3-238	ENST00000569430	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	RASSF4	Q9H2L5	321 aa		13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	MYO5B	Q9ULV0	1848 aa		13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	PATL2	C9JE40	543 aa	Known RBP	13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	SART3	Q15020	963 aa	Known RBP	13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	SPECC1	Q5M775	1068 aa		13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	DIP2C	Q9Y2E4	1556 aa		13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	MED14	O60244	1454 aa		13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	MAP3K5	Q99683	1374 aa		13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	ANKRD13D	Q6ZTN6	518 aa		13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	GOLGA1	Q92805	767 aa		13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	BAG1	Q99933	345 aa	Predicted RBP	13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	CNNM1	Q9NRU3	951 aa		13.12	□□□□□ -0.31
CLN3-238	ENST00000569430	ELP1	O95163	1332 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	CFAP74	Q9C0B2	1584 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	AFM	P43652	599 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	MYL5	Q02045	173 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	GOLGA6L9	A6NEM1	432 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	IARS	P41252	1262 aa	Known RBP	13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	SMC1A	Q14683	1233 aa	Known RBP	13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	DPCR1	Q3MIW9	517 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	ANKRD7	Q92527	254 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	NUP88	Q99567	741 aa	Predicted RBP	13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	KIAA1468	Q9P260	1216 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	LMTK2	Q8IWU2	1503 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	PRC1	O43663	620 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	XBP1	P17861	261 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	NECTIN1	Q15223	517 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	SMARCC1	Q92922	1105 aa	Predicted RBP	13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	GBP3	Q9H0R5	595 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	CENPH	Q9H3R5	247 aa		13.11	□□□□□ -0.31
CLN3-238	ENST00000569430	ATP10D	Q9P241	1426 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	METAP2	P50579	478 aa	Known RBP eCLIP	13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	CLCN6	P51797	869 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	ZSCAN26	Q16670	478 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	ZNF569	Q5MCW4	686 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	BEND3	Q5T5X7	828 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	PPP1R13B	Q96KQ4	1090 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	SLC26A6	Q9BXS9	759 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.1	□□□□□ -0.31	2e-6	■■■■■ 40.7
CLN3-238	ENST00000569430	LRRC7	Q96NW7	1537 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	NDUFA8	P51970	172 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	HNRNPH2	P55795	449 aa	Known RBP	13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	CABP4	P57796	275 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	MTX1	Q13505	466 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	KIAA1328	Q86T90	577 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	CERS3	Q8IU89	383 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	DESI2	Q9BSY9	194 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	ZBTB3	Q9H5J0	574 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	PCDHA7	Q9UN72	937 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	KIAA1210	Q9ULL0	1709 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	PNPLA6	Q8IY17	1366 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	SETBP1	Q9Y6X0	1596 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	GOLGA8A	A7E2F4	631 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	SCRN1	Q12765	414 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	ZCCHC17	Q9NP64	241 aa	Known RBP	13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	PAG1	Q9NWQ8	432 aa		13.1	□□□□□ -0.31
CLN3-238	ENST00000569430	HOXC9	P31274	260 aa		13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	GTF2A1	P52655	376 aa	Predicted RBP	13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	ADK	P55263	362 aa	Known RBP	13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	IPO4	Q8TEX9	1081 aa	Known RBP	13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	IMPACT	Q9P2X3	320 aa		13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	TAT	P17735	454 aa	Predicted RBP	13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	EPC1	Q9H2F5	836 aa		13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	ROBO2	Q9HCK4	1378 aa		13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	CCDC175	P0C221	793 aa		13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	GYS2	P54840	703 aa		13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	NCOA7	Q8NI08	942 aa		13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.09	□□□□□ -0.31
CLN3-238	ENST00000569430	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.08	□□□□□ -0.31
CLN3-238	ENST00000569430	IFIT3	O14879	490 aa	Known RBP	13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	DNA2	P51530	1060 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	EIF4A1	P60842	406 aa	Known RBP	13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	PLA2G4D	Q86XP0	818 aa		13.08	□□□□□ -0.32
CLN3-238	ENST00000569430	RABEP2	Q9H5N1	569 aa		13.08	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms