RNA–Protein interactions for RNA: ENST00000565995.5

RNF40-208, Transcript of ring finger protein 40, humanhuman

TSL 4

Gene RNF40, Length 586 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-208ENST00000565995 UBE2Q2LH0YL09 131 aa16.51■□□□□ 0.23
RNF40-208ENST00000565995 NBPF9Q3BBW0 867 aa16.51■□□□□ 0.23
RNF40-208ENST00000565995 DACT2Q5SW24 774 aa16.51■□□□□ 0.23
RNF40-208ENST00000565995 BSDC1Q9NW68 430 aaPredicted RBP16.51■□□□□ 0.23
RNF40-208ENST00000565995 WTIPA6NIX2 430 aaPredicted RBP16.5■□□□□ 0.23
RNF40-208ENST00000565995 GPR25O00155 361 aa16.5■□□□□ 0.23
RNF40-208ENST00000565995 WNT10BO00744 389 aa16.5■□□□□ 0.23
RNF40-208ENST00000565995 TBC1D8O95759 1140 aa16.5■□□□□ 0.23
RNF40-208ENST00000565995 STRIP1Q5VSL9 837 aa16.5■□□□□ 0.23
RNF40-208ENST00000565995 TTLL11Q8NHH1 800 aa16.5■□□□□ 0.23
RNF40-208ENST00000565995 CDC5LQ99459 802 aaKnown RBP16.5■□□□□ 0.23
RNF40-208ENST00000565995 CHMP4AQ9BY43 222 aa16.5■□□□□ 0.23
RNF40-208ENST00000565995 IFT57Q9NWB7 429 aa16.5■□□□□ 0.23
RNF40-208ENST00000565995 MINPP1Q9UNW1 487 aa16.5■□□□□ 0.23
RNF40-208ENST00000565995 GNAI1P63096 354 aa16.49■□□□□ 0.23
RNF40-208ENST00000565995 WDR43Q15061 677 aaKnown RBP eCLIP16.49■□□□□ 0.23
RNF40-208ENST00000565995 FBXO46Q6PJ61 603 aaPredicted RBP16.49■□□□□ 0.23
RNF40-208ENST00000565995 OGFOD1Q8N543 542 aa16.49■□□□□ 0.23
RNF40-208ENST00000565995 HDAC9Q9UKV0 1011 aa16.49■□□□□ 0.23
RNF40-208ENST00000565995 KIAA0100Q14667 2235 aaKnown RBP16.48■□□□□ 0.23
RNF40-208ENST00000565995 DDX58O95786 925 aaKnown RBP16.48■□□□□ 0.23
RNF40-208ENST00000565995 CCT4P50991 539 aaKnown RBP16.48■□□□□ 0.23
RNF40-208ENST00000565995 CTSWP56202 376 aa16.48■□□□□ 0.23
RNF40-208ENST00000565995 LDLRAD1Q5T700 205 aa16.48■□□□□ 0.23
RNF40-208ENST00000565995 ZBED3Q96IU2 234 aaPredicted RBP16.48■□□□□ 0.23
RNF40-208ENST00000565995 COA1Q9GZY4 146 aa16.48■□□□□ 0.23
RNF40-208ENST00000565995 SCAF8Q9UPN6 1271 aaKnown RBP16.48■□□□□ 0.23
RNF40-208ENST00000565995 NF2P35240 595 aa16.47■□□□□ 0.23
RNF40-208ENST00000565995 SREBF2Q12772 1141 aa16.47■□□□□ 0.23
RNF40-208ENST00000565995 PRAMEF18Q5VWM3 479 aa16.47■□□□□ 0.23
RNF40-208ENST00000565995 JARID2Q92833 1246 aaPredicted RBP16.47■□□□□ 0.23
RNF40-208ENST00000565995 LEMD3Q9Y2U8 911 aa16.47■□□□□ 0.23
RNF40-208ENST00000565995 COL1A1P02452 1464 aaPredicted RBP16.47■□□□□ 0.23
RNF40-208ENST00000565995 IGKV5-2P06315 115 aa16.46■□□□□ 0.23
RNF40-208ENST00000565995 PTPN12Q05209 780 aaKnown RBP16.46■□□□□ 0.23
RNF40-208ENST00000565995 CALD1Q05682 793 aaKnown RBP16.46■□□□□ 0.23
RNF40-208ENST00000565995 KSR2Q6VAB6 950 aa16.46■□□□□ 0.23
RNF40-208ENST00000565995 C8orf58Q8NAV2 365 aa16.46■□□□□ 0.23
RNF40-208ENST00000565995 CCDC85AQ96PX6 553 aaPredicted RBP16.46■□□□□ 0.23
RNF40-208ENST00000565995 BRCA2P51587 3418 aa16.46■□□□□ 0.23
RNF40-208ENST00000565995 OTOFQ9HC10 1997 aa16.46■□□□□ 0.22
RNF40-208ENST00000565995 FKTNO75072 461 aa16.45■□□□□ 0.22
RNF40-208ENST00000565995 INHBEP58166 350 aa16.45■□□□□ 0.22
RNF40-208ENST00000565995 MAP3K11Q16584 847 aa16.45■□□□□ 0.22
RNF40-208ENST00000565995 CCDC30Q5VVM6 783 aa16.45■□□□□ 0.22
RNF40-208ENST00000565995 ARMC9Q7Z3E5 817 aa16.45■□□□□ 0.22
RNF40-208ENST00000565995 TXNRD3Q86VQ6 643 aa16.45■□□□□ 0.22
RNF40-208ENST00000565995 APOBEC3FQ8IUX4 373 aaKnown RBP16.45■□□□□ 0.22
RNF40-208ENST00000565995 MXD3Q9BW11 206 aa16.45■□□□□ 0.22
RNF40-208ENST00000565995 GREM2Q9H772 168 aa16.45■□□□□ 0.22
RNF40-208ENST00000565995 MAP3K2Q9Y2U5 619 aa16.45■□□□□ 0.22
RNF40-208ENST00000565995 UNCXA6NJT0 531 aa16.44■□□□□ 0.22
RNF40-208ENST00000565995 ELL2O00472 640 aaPredicted RBP16.44■□□□□ 0.22
RNF40-208ENST00000565995 ALDH1A1P00352 501 aa16.44■□□□□ 0.22
RNF40-208ENST00000565995 TTLL12Q14166 644 aaPredicted RBP16.44■□□□□ 0.22
RNF40-208ENST00000565995 SPRYD7Q5W111 196 aa16.44■□□□□ 0.22
RNF40-208ENST00000565995 TTLL5Q6EMB2 1281 aa16.44■□□□□ 0.22
RNF40-208ENST00000565995 R3HDMLQ9H3Y0 253 aa16.44■□□□□ 0.22
RNF40-208ENST00000565995 H7C1W4 665 aa16.43■□□□□ 0.22
RNF40-208ENST00000565995 MTMR14Q8NCE2 650 aa16.43■□□□□ 0.22
RNF40-208ENST00000565995 PLA2G12BQ9BX93 195 aa16.43■□□□□ 0.22
RNF40-208ENST00000565995 PI4KAP2A4QPH2 592 aa16.42■□□□□ 0.22
RNF40-208ENST00000565995 APAF1O14727 1248 aa16.42■□□□□ 0.22
RNF40-208ENST00000565995 PI4KAP1Q8N8J0 262 aa16.42■□□□□ 0.22
RNF40-208ENST00000565995 ANKRD2Q9GZV1 360 aa16.42■□□□□ 0.22
RNF40-208ENST00000565995 ZNF804BA4D1E1 1349 aa16.42■□□□□ 0.22
RNF40-208ENST00000565995 ARAP2Q8WZ64 1704 aa16.42■□□□□ 0.22
RNF40-208ENST00000565995 MANSC4A6NHS7 340 aaPredicted RBP16.41■□□□□ 0.22
RNF40-208ENST00000565995 NEURL1BA8MQ27 555 aa16.41■□□□□ 0.22
RNF40-208ENST00000565995 SASH1O94885 1247 aa16.41■□□□□ 0.22
RNF40-208ENST00000565995 CSF1RP07333 972 aa16.41■□□□□ 0.22
RNF40-208ENST00000565995 ZBTB48P10074 688 aaPredicted RBP16.41■□□□□ 0.22
RNF40-208ENST00000565995 INTS3Q68E01 1043 aaKnown RBP16.41■□□□□ 0.22
RNF40-208ENST00000565995 GCC1Q96CN9 775 aa16.41■□□□□ 0.22
RNF40-208ENST00000565995 IRS2Q9Y4H2 1338 aa16.41■□□□□ 0.22
RNF40-208ENST00000565995 NEXNQ0ZGT2 675 aa16.4■□□□□ 0.22
RNF40-208ENST00000565995 C15orf52Q6ZUT6 534 aaKnown RBP16.4■□□□□ 0.22
RNF40-208ENST00000565995 IFNL1Q8IU54 200 aa16.4■□□□□ 0.22
RNF40-208ENST00000565995 TSPYL6Q8N831 410 aa16.4■□□□□ 0.22
RNF40-208ENST00000565995 SSC5DA1L4H1 1573 aa16.39■□□□□ 0.21
RNF40-208ENST00000565995 IGHMBP2P38935 993 aaKnown RBP16.39■□□□□ 0.21
RNF40-208ENST00000565995 CASP7P55210 303 aa16.39■□□□□ 0.21
RNF40-208ENST00000565995 MKRN3Q13064 507 aaKnown RBP16.39■□□□□ 0.21
RNF40-208ENST00000565995 DDX10Q13206 875 aaKnown RBP16.39■□□□□ 0.21
RNF40-208ENST00000565995 CWF19L2Q2TBE0 894 aaKnown RBP16.39■□□□□ 0.21
RNF40-208ENST00000565995 KIAA0825Q8IV33 1275 aa16.39■□□□□ 0.21
RNF40-208ENST00000565995 SLC10A4Q96EP9 437 aa16.39■□□□□ 0.21
RNF40-208ENST00000565995 DEFB129Q9H1M3 183 aa16.39■□□□□ 0.21
RNF40-208ENST00000565995 ANGEL1Q9UNK9 670 aaKnown RBP16.39■□□□□ 0.21
RNF40-208ENST00000565995 PPP2R3BQ9Y5P8 575 aa16.39■□□□□ 0.21
RNF40-208ENST00000565995 KLRK1P26718 216 aa16.38■□□□□ 0.21
RNF40-208ENST00000565995 FKBP1AP62942 108 aaKnown RBP16.38■□□□□ 0.21
RNF40-208ENST00000565995 GTF2IP78347 998 aa16.38■□□□□ 0.21
RNF40-208ENST00000565995 CD209Q9NNX6 404 aa16.38■□□□□ 0.21
RNF40-208ENST00000565995 ITGA6P23229 1130 aa16.37■□□□□ 0.21
RNF40-208ENST00000565995 PRKG1Q13976 671 aa16.37■□□□□ 0.21
RNF40-208ENST00000565995 GCKRQ14397 625 aa16.37■□□□□ 0.21
RNF40-208ENST00000565995 OTOP1Q7RTM1 612 aa16.37■□□□□ 0.21
RNF40-208ENST00000565995 UBE3BQ7Z3V4 1068 aa16.37■□□□□ 0.21
RNF40-208ENST00000565995 FBXW7Q969H0 707 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 166.1 ms