RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 MRVI1Q9Y6F6 885 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 SNRPA1P09661 255 aaKnown RBP15.58■□□□□ 0.09
CLK3-206ENST00000562078 VPS72Q15906 364 aa15.58■□□□□ 0.09
CLK3-206ENST00000562078 FNBP4Q8N3X1 1017 aaPredicted RBP15.58■□□□□ 0.09
CLK3-206ENST00000562078 TRMT1Q9NXH9 659 aaKnown RBP15.58■□□□□ 0.09
CLK3-206ENST00000562078 FAM98CQ17RN3 349 aaKnown RBP15.58■□□□□ 0.08
CLK3-206ENST00000562078 CTR9Q6PD62 1173 aa15.58■□□□□ 0.08
CLK3-206ENST00000562078 BARGINQ6ZT62 677 aa15.58■□□□□ 0.08
CLK3-206ENST00000562078 COPS6Q7L5N1 327 aa15.58■□□□□ 0.08
CLK3-206ENST00000562078 PLA2G4DQ86XP0 818 aa15.58■□□□□ 0.08
CLK3-206ENST00000562078 GPATCH11Q8N954 259 aa15.58■□□□□ 0.08
CLK3-206ENST00000562078 ZCCHC17Q9NP64 241 aaKnown RBP15.58■□□□□ 0.08
CLK3-206ENST00000562078 A0A0G2JS52 829 aa15.57■□□□□ 0.08
CLK3-206ENST00000562078 IGKV5-2P06315 115 aa15.57■□□□□ 0.08
CLK3-206ENST00000562078 ZSCAN22P10073 491 aaPredicted RBP15.57■□□□□ 0.08
CLK3-206ENST00000562078 GUCY2CP25092 1073 aa15.57■□□□□ 0.08
CLK3-206ENST00000562078 CAMK4Q16566 473 aa15.57■□□□□ 0.08
CLK3-206ENST00000562078 SUCLG2Q96I99 432 aa15.57■□□□□ 0.08
CLK3-206ENST00000562078 ESYT1Q9BSJ8 1104 aa15.57■□□□□ 0.08
CLK3-206ENST00000562078 CLIP2Q9UDT6 1046 aa15.57■□□□□ 0.08
CLK3-206ENST00000562078 HSP90AB4PQ58FF6 505 aa15.57■□□□□ 0.08
CLK3-206ENST00000562078 CT47A1Q5JQC4 288 aaPredicted RBP15.57■□□□□ 0.08
CLK3-206ENST00000562078 SYTL4Q96C24 671 aaPredicted RBP15.57■□□□□ 0.08
CLK3-206ENST00000562078 CBX8Q9HC52 389 aa15.57■□□□□ 0.08
CLK3-206ENST00000562078 PA2G4Q9UQ80 394 aaKnown RBP15.57■□□□□ 0.08
CLK3-206ENST00000562078 CHMP3Q9Y3E7 222 aa15.57■□□□□ 0.08
CLK3-206ENST00000562078 TYRO3Q06418 890 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 SRLQ86TD4 932 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 DRC1Q96MC2 740 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 BICC1Q9H694 974 aaKnown RBP15.56■□□□□ 0.08
CLK3-206ENST00000562078 CCDC171Q6TFL3 1326 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 NUP188Q5SRE5 1749 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 DTNBO60941 627 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 MAP4K4O95819 1239 aaPredicted RBP15.56■□□□□ 0.08
CLK3-206ENST00000562078 CHMLP26374 656 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 NEXNQ0ZGT2 675 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 PI4K2BQ8TCG2 481 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 KAZALD1Q96I82 304 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 UTYO14607 1347 aa15.56■□□□□ 0.08
CLK3-206ENST00000562078 PTCD1O75127 700 aaKnown RBP15.55■□□□□ 0.08
CLK3-206ENST00000562078 TSGA10IPQ3SY00 556 aa15.55■□□□□ 0.08
CLK3-206ENST00000562078 LRP10Q7Z4F1 713 aa15.55■□□□□ 0.08
CLK3-206ENST00000562078 MYD88Q99836 296 aa15.55■□□□□ 0.08
CLK3-206ENST00000562078 JRKLQ9Y4A0 524 aa15.55■□□□□ 0.08
CLK3-206ENST00000562078 KCPQ6ZWJ8 1503 aa15.55■□□□□ 0.08
CLK3-206ENST00000562078 NEURL1BA8MQ27 555 aa15.55■□□□□ 0.08
CLK3-206ENST00000562078 TPM4P67936 248 aa15.55■□□□□ 0.08
CLK3-206ENST00000562078 DNM1Q05193 864 aaKnown RBP15.55■□□□□ 0.08
CLK3-206ENST00000562078 ANO6Q4KMQ2 910 aa15.55■□□□□ 0.08
CLK3-206ENST00000562078 LRRC8AQ8IWT6 810 aa15.55■□□□□ 0.08
CLK3-206ENST00000562078 RRP15Q9Y3B9 282 aaKnown RBP15.55■□□□□ 0.08
CLK3-206ENST00000562078 RAD50Q92878 1312 aa15.55■□□□□ 0.08
CLK3-206ENST00000562078 SART3Q15020 963 aaKnown RBP15.54■□□□□ 0.08
CLK3-206ENST00000562078 CKAP2LQ8IYA6 745 aa15.54■□□□□ 0.08
CLK3-206ENST00000562078 PIGBQ92521 554 aa15.54■□□□□ 0.08
CLK3-206ENST00000562078 AFF2P51816 1311 aa15.54■□□□□ 0.08
CLK3-206ENST00000562078 STX6O43752 255 aa15.54■□□□□ 0.08
CLK3-206ENST00000562078 F13A1P00488 732 aa15.54■□□□□ 0.08
CLK3-206ENST00000562078 SYT1P21579 422 aa15.54■□□□□ 0.08
CLK3-206ENST00000562078 ARHGAP29Q52LW3 1261 aa15.54■□□□□ 0.08
CLK3-206ENST00000562078 AXDND1Q5T1B0 1012 aaPredicted RBP15.54■□□□□ 0.08
CLK3-206ENST00000562078 RNF20Q5VTR2 975 aa15.54■□□□□ 0.08
CLK3-206ENST00000562078 METTL22Q9BUU2 404 aaPredicted RBP15.54■□□□□ 0.08
CLK3-206ENST00000562078 ZRANB2O95218 330 aaKnown RBP eCLIP15.53■□□□□ 0.08
CLK3-206ENST00000562078 GCKRQ14397 625 aa15.53■□□□□ 0.08
CLK3-206ENST00000562078 ANKRD13DQ6ZTN6 518 aa15.53■□□□□ 0.08
CLK3-206ENST00000562078 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.53■□□□□ 0.08
CLK3-206ENST00000562078 PACS2Q86VP3 889 aa15.53■□□□□ 0.08
CLK3-206ENST00000562078 CNKSR2Q8WXI2 1034 aa15.53■□□□□ 0.08
CLK3-206ENST00000562078 LARP6Q9BRS8 491 aaKnown RBP15.53■□□□□ 0.08
CLK3-206ENST00000562078 BRMS1Q9HCU9 246 aa15.53■□□□□ 0.08
CLK3-206ENST00000562078 ANO2Q9NQ90 1003 aa15.53■□□□□ 0.08
CLK3-206ENST00000562078 SKILP12757 684 aa15.53■□□□□ 0.08
CLK3-206ENST00000562078 MAP3K11Q16584 847 aa15.53■□□□□ 0.08
CLK3-206ENST00000562078 MARCH10Q8NA82 808 aaPredicted RBP15.53■□□□□ 0.08
CLK3-206ENST00000562078 SEC31AO94979 1220 aaKnown RBP15.52■□□□□ 0.08
CLK3-206ENST00000562078 CNPY4Q8N129 248 aa15.52■□□□□ 0.08
CLK3-206ENST00000562078 CLASRPQ8N2M8 674 aaKnown RBP15.52■□□□□ 0.08
CLK3-206ENST00000562078 ASAP1Q9ULH1 1129 aa15.52■□□□□ 0.08
CLK3-206ENST00000562078 BANK1Q8NDB2 785 aa15.52■□□□□ 0.07
CLK3-206ENST00000562078 IL25Q9H293 177 aa15.52■□□□□ 0.07
CLK3-206ENST00000562078 CWC15Q9P013 229 aaKnown RBP15.52■□□□□ 0.07
CLK3-206ENST00000562078 TJP1Q07157 1748 aa15.52■□□□□ 0.07
CLK3-206ENST00000562078 BCL9O00512 1426 aa15.51■□□□□ 0.07
CLK3-206ENST00000562078 MCCP23508 829 aa15.51■□□□□ 0.07
CLK3-206ENST00000562078 OAS2P29728 719 aaKnown RBP15.51■□□□□ 0.07
CLK3-206ENST00000562078 ERC1Q8IUD2 1116 aa15.51■□□□□ 0.07
CLK3-206ENST00000562078 ACSBG1Q96GR2 724 aa15.51■□□□□ 0.07
CLK3-206ENST00000562078 GPS2Q13227 327 aa15.51■□□□□ 0.07
CLK3-206ENST00000562078 TMCO3Q6UWJ1 677 aa15.51■□□□□ 0.07
CLK3-206ENST00000562078 ZNF622Q969S3 477 aaKnown RBP eCLIP15.51■□□□□ 0.072e-8■■□□□ 11.4
CLK3-206ENST00000562078 SIL1Q9H173 461 aa15.51■□□□□ 0.07
CLK3-206ENST00000562078 USP42Q9H9J4 1324 aaKnown RBP15.51■□□□□ 0.07
CLK3-206ENST00000562078 A0A1B0GUL7 405 aa15.5■□□□□ 0.07
CLK3-206ENST00000562078 LIG1P18858 919 aa15.5■□□□□ 0.07
CLK3-206ENST00000562078 TTC41PQ6P2S7 1318 aa15.5■□□□□ 0.07
CLK3-206ENST00000562078 CCAR2Q8N163 923 aaKnown RBP15.5■□□□□ 0.07
CLK3-206ENST00000562078 GOLGA6L1Q8N7Z2 621 aa15.5■□□□□ 0.07
CLK3-206ENST00000562078 FBXO18Q8NFZ0 1043 aa15.5■□□□□ 0.07
CLK3-206ENST00000562078 NUP62CLQ9H1M0 184 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms