RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ZSCAN25Q6NSZ9 544 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 NRKQ7Z2Y5 1582 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 ZKSCAN3Q9BRR0 538 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 ARMT1Q9H993 441 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 CWC22Q9HCG8 908 aaKnown RBP6.49□□□□□ -1.37
VPS13C-209ENST00000560637 ERBB4Q15303 1308 aa6.49□□□□□ -1.37
VPS13C-209ENST00000560637 MBD4O95243 580 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 LDHBP07195 334 aaKnown RBP6.48□□□□□ -1.37
VPS13C-209ENST00000560637 NKX1-1Q15270 411 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-209ENST00000560637 ZNF827Q17R98 1081 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 MFSD14BQ5SR56 506 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 BLOC1S2Q6QNY1 142 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 POTEDQ86YR6 584 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 EVI5LQ96CN4 794 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 IPO9Q96P70 1041 aaKnown RBP6.48□□□□□ -1.37
VPS13C-209ENST00000560637 VAT1LQ9HCJ6 419 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 DBNLQ9UJU6 430 aaKnown RBP6.48□□□□□ -1.37
VPS13C-209ENST00000560637 ADGRB2O60241 1585 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 PPEF1O14829 653 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-209ENST00000560637 CHGBP05060 677 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 RXRAP19793 462 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 GUCY1B3Q02153 619 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 CCDC102BQ68D86 513 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 PRR5LQ6MZQ0 368 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 SSH3Q8TE77 659 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 UBAC1Q9BSL1 405 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 ZNF277Q9NRM2 450 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-209ENST00000560637 MCM9Q9NXL9 1143 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 MARF1Q9Y4F3 1742 aaKnown RBP6.48□□□□□ -1.37
VPS13C-209ENST00000560637 CEMIPQ8WUJ3 1361 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 HIP1O00291 1037 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 ZNF213O14771 459 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 SLC27A3Q5K4L6 730 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 TTLL5Q6EMB2 1281 aa6.48□□□□□ -1.37
VPS13C-209ENST00000560637 TRMT1LQ7Z2T5 733 aaKnown RBP6.48□□□□□ -1.37
VPS13C-209ENST00000560637 ANO8Q9HCE9 1232 aaPredicted RBP6.48□□□□□ -1.37
VPS13C-209ENST00000560637 CLRN2A0PK11 232 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 ERVV-1B6SEH8 477 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 SASH1O94885 1247 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 CLSTN1O94985 981 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 PDE8BO95263 885 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 UQCRFS1P1P0C7P4 283 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 ALDH1B1P30837 517 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 CACNB3P54284 484 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 DIXDC1Q155Q3 683 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 ZYXQ15942 572 aaKnown RBP6.47□□□□□ -1.37
VPS13C-209ENST00000560637 IMMTQ16891 758 aaKnown RBP6.47□□□□□ -1.37
VPS13C-209ENST00000560637 CPLX2Q6PUV4 134 aaKnown RBP6.47□□□□□ -1.37
VPS13C-209ENST00000560637 FERMT3Q86UX7 667 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 LPIN2Q92539 896 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 ANKRD2Q9GZV1 360 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 SMC3Q9UQE7 1217 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 CYP46A1Q9Y6A2 500 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 UBN2Q6ZU65 1347 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 FMN2Q9NZ56 1722 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 WTIPA6NIX2 430 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-209ENST00000560637 GYS1P13807 737 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 SF3A1Q15459 793 aaKnown RBP6.47□□□□□ -1.37
VPS13C-209ENST00000560637 MAPKAPK5Q8IW41 473 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 TTF2Q9UNY4 1162 aaKnown RBP6.47□□□□□ -1.37
VPS13C-209ENST00000560637 ZNF804BA4D1E1 1349 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 LRP6O75581 1613 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 TSPY2A6NKD2 308 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 H7C1W4 665 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 SART3Q15020 963 aaKnown RBP6.47□□□□□ -1.37
VPS13C-209ENST00000560637 C3orf67Q6ZVT6 689 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 MICU3Q86XE3 530 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 CCAR1Q8IX12 1150 aaKnown RBP6.47□□□□□ -1.37
VPS13C-209ENST00000560637 NIM1KQ8IY84 436 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 SDR42E1Q8WUS8 393 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 EYA3Q99504 573 aa6.47□□□□□ -1.37
VPS13C-209ENST00000560637 RNF216Q9NWF9 866 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-209ENST00000560637 SLC3A2P08195 630 aaKnown RBP6.46□□□□□ -1.37
VPS13C-209ENST00000560637 BMP2KLQ5H9B9 411 aa6.46□□□□□ -1.37
VPS13C-209ENST00000560637 CCDC83Q8IWF9 413 aa6.46□□□□□ -1.37
VPS13C-209ENST00000560637 TTLL6Q8N841 843 aa6.46□□□□□ -1.37
VPS13C-209ENST00000560637 FEZ1Q99689 392 aa6.46□□□□□ -1.37
VPS13C-209ENST00000560637 BAG3O95817 575 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 SSFA2P28290 1259 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 CREBRFQ8IUR6 639 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 ZNF444Q8N0Y2 327 aaPredicted RBP6.46□□□□□ -1.38
VPS13C-209ENST00000560637 SPATA5Q8NB90 893 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 CNKSR1Q969H4 720 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 ISCA1Q9BUE6 129 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 MXD3Q9BW11 206 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 SPON1Q9HCB6 807 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 PDRG1Q9NUG6 133 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 RGS17Q9UGC6 210 aaPredicted RBP6.46□□□□□ -1.38
VPS13C-209ENST00000560637 RBM8AQ9Y5S9 174 aaKnown RBP6.46□□□□□ -1.38
VPS13C-209ENST00000560637 NCAPD2Q15021 1401 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 CCDC69A6NI79 296 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 IFIT3O14879 490 aaKnown RBP6.46□□□□□ -1.38
VPS13C-209ENST00000560637 AOC3Q16853 763 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 CLEC4GQ6UXB4 293 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 HOMER1Q86YM7 354 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 TEX11Q8IYF3 940 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 NECAB1Q8N987 351 aa6.46□□□□□ -1.38
VPS13C-209ENST00000560637 NWD2Q9ULI1 1742 aa6.45□□□□□ -1.38
VPS13C-209ENST00000560637 COL3A1P02461 1466 aaPredicted RBP6.45□□□□□ -1.38
VPS13C-209ENST00000560637 ZNF532Q9HCE3 1301 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms