RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CDCA5Q96FF9 252 aa14.83□□□□□ -0.04
LDLR-212ENST00000560467 CCDC85AQ96PX6 553 aaPredicted RBP14.83□□□□□ -0.04
LDLR-212ENST00000560467 ZC3H12CQ9C0D7 883 aaKnown RBP14.83□□□□□ -0.04
LDLR-212ENST00000560467 PODXL2Q9NZ53 605 aa14.83□□□□□ -0.04
LDLR-212ENST00000560467 ANKIB1Q9P2G1 1089 aa14.83□□□□□ -0.04
LDLR-212ENST00000560467 GGA1Q9UJY5 639 aa14.83□□□□□ -0.04
LDLR-212ENST00000560467 CASP8AP2Q9UKL3 1982 aa14.82□□□□□ -0.04
LDLR-212ENST00000560467 TRPA1O75762 1119 aa14.82□□□□□ -0.04
LDLR-212ENST00000560467 SLC10A3P09131 477 aa14.82□□□□□ -0.04
LDLR-212ENST00000560467 CCDC102AQ96A19 550 aa14.82□□□□□ -0.04
LDLR-212ENST00000560467 MYD88Q99836 296 aa14.82□□□□□ -0.04
LDLR-212ENST00000560467 PHAXQ9H814 394 aaKnown RBP14.82□□□□□ -0.04
LDLR-212ENST00000560467 RNF186Q9NXI6 227 aa14.82□□□□□ -0.04
LDLR-212ENST00000560467 SAGE1Q9NXZ1 904 aa14.82□□□□□ -0.04
LDLR-212ENST00000560467 G3V3G9 751 aa14.81□□□□□ -0.04
LDLR-212ENST00000560467 ZNF280AP59817 542 aaPredicted RBP14.81□□□□□ -0.04
LDLR-212ENST00000560467 IRX6P78412 446 aaPredicted RBP14.81□□□□□ -0.04
LDLR-212ENST00000560467 AAMPQ13685 434 aa14.81□□□□□ -0.04
LDLR-212ENST00000560467 SCARF1Q14162 830 aa14.81□□□□□ -0.04
LDLR-212ENST00000560467 DCAF8Q5TAQ9 597 aa14.81□□□□□ -0.04
LDLR-212ENST00000560467 ANGEL2Q5VTE6 544 aaKnown RBP14.81□□□□□ -0.04
LDLR-212ENST00000560467 FKBP5Q13451 457 aaPredicted RBP14.8□□□□□ -0.04
LDLR-212ENST00000560467 CCDC152Q4G0S7 254 aa14.8□□□□□ -0.04
LDLR-212ENST00000560467 RSBN1LQ6PCB5 846 aaPredicted RBP14.8□□□□□ -0.04
LDLR-212ENST00000560467 RASAL3Q86YV0 1011 aa14.8□□□□□ -0.04
LDLR-212ENST00000560467 CSRNP1Q96S65 589 aa14.8□□□□□ -0.04
LDLR-212ENST00000560467 SCAF8Q9UPN6 1271 aaKnown RBP14.8□□□□□ -0.04
LDLR-212ENST00000560467 WTIPA6NIX2 430 aaPredicted RBP14.79□□□□□ -0.04
LDLR-212ENST00000560467 PCCAP05165 728 aaPredicted RBP14.79□□□□□ -0.04
LDLR-212ENST00000560467 SOX10P56693 466 aa14.79□□□□□ -0.04
LDLR-212ENST00000560467 SCN9AQ15858 1988 aa14.79□□□□□ -0.04
LDLR-212ENST00000560467 AGBL3Q8NEM8 1001 aa14.79□□□□□ -0.04
LDLR-212ENST00000560467 CLUAP1Q96AJ1 413 aa14.79□□□□□ -0.04
LDLR-212ENST00000560467 ZNF609O15014 1411 aa14.78□□□□□ -0.04
LDLR-212ENST00000560467 PDE8AO60658 829 aa14.78□□□□□ -0.04
LDLR-212ENST00000560467 FLIIQ13045 1269 aa14.78□□□□□ -0.04
LDLR-212ENST00000560467 MOB2Q70IA6 237 aa14.78□□□□□ -0.04
LDLR-212ENST00000560467 CCDC191Q8NCU4 936 aa14.78□□□□□ -0.04
LDLR-212ENST00000560467 GMLQ99445 158 aa14.78□□□□□ -0.04
LDLR-212ENST00000560467 CWC25Q9NXE8 425 aaPredicted RBP14.78□□□□□ -0.04
LDLR-212ENST00000560467 XDHP47989 1333 aa14.77□□□□□ -0.04
LDLR-212ENST00000560467 USP17L8P0C7I0 530 aa14.77□□□□□ -0.05
LDLR-212ENST00000560467 TRIM27P14373 513 aa14.77□□□□□ -0.05
LDLR-212ENST00000560467 HSP90B1P14625 803 aaKnown RBP14.77□□□□□ -0.05
LDLR-212ENST00000560467 ANKRD18AQ8IVF6 992 aa14.77□□□□□ -0.05
LDLR-212ENST00000560467 ITPRIPQ8IWB1 547 aa14.77□□□□□ -0.05
LDLR-212ENST00000560467 MYOZ2Q9NPC6 264 aa14.77□□□□□ -0.05
LDLR-212ENST00000560467 DDX19BQ9UMR2 479 aa14.77□□□□□ -0.05
LDLR-212ENST00000560467 CCT4P50991 539 aaKnown RBP14.76□□□□□ -0.05
LDLR-212ENST00000560467 PRAMEF18Q5VWM3 479 aa14.76□□□□□ -0.05
LDLR-212ENST00000560467 SLC4A10Q6U841 1118 aa14.76□□□□□ -0.05
LDLR-212ENST00000560467 MXD3Q9BW11 206 aa14.76□□□□□ -0.05
LDLR-212ENST00000560467 PDE4DIPQ5VU43 2346 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 USP17L3A6NCW0 530 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 USP17L4A6NCW7 530 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 ATP2B4P23634 1241 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 CTSWP56202 376 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 NEXNQ0ZGT2 675 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 USP17L1Q7RTZ2 530 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 CTU1Q7Z7A3 348 aaKnown RBP14.75□□□□□ -0.05
LDLR-212ENST00000560467 PANK1Q8TE04 598 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 METTL22Q9BUU2 404 aaPredicted RBP14.75□□□□□ -0.05
LDLR-212ENST00000560467 PPP4R2Q9NY27 417 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 HDAC5Q9UQL6 1122 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 COG6Q9Y2V7 657 aa14.75□□□□□ -0.05
LDLR-212ENST00000560467 UBE2Q2LH0YL09 131 aa14.74□□□□□ -0.05
LDLR-212ENST00000560467 FKBP1BP68106 108 aa14.74□□□□□ -0.05
LDLR-212ENST00000560467 MVPQ14764 893 aaKnown RBP14.74□□□□□ -0.05
LDLR-212ENST00000560467 NBPF9Q3BBW0 867 aa14.74□□□□□ -0.05
LDLR-212ENST00000560467 CRBNQ96SW2 442 aa14.74□□□□□ -0.05
LDLR-212ENST00000560467 GREM2Q9H772 168 aa14.74□□□□□ -0.05
LDLR-212ENST00000560467 MAP3K2Q9Y2U5 619 aa14.74□□□□□ -0.05
LDLR-212ENST00000560467 PITPNM2Q9BZ72 1349 aa14.73□□□□□ -0.05
LDLR-212ENST00000560467 IGKV5-2P06315 115 aa14.73□□□□□ -0.05
LDLR-212ENST00000560467 KSR2Q6VAB6 950 aa14.73□□□□□ -0.05
LDLR-212ENST00000560467 PODNQ7Z5L7 613 aa14.73□□□□□ -0.05
LDLR-212ENST00000560467 FBXW7Q969H0 707 aa14.73□□□□□ -0.05
LDLR-212ENST00000560467 CDC5LQ99459 802 aaKnown RBP14.73□□□□□ -0.05
LDLR-212ENST00000560467 PAPPA2Q9BXP8 1791 aa14.73□□□□□ -0.05
LDLR-212ENST00000560467 MED23Q9ULK4 1368 aa14.73□□□□□ -0.05
LDLR-212ENST00000560467 SASH1O94885 1247 aa14.72□□□□□ -0.05
LDLR-212ENST00000560467 DACT2Q5SW24 774 aa14.72□□□□□ -0.05
LDLR-212ENST00000560467 C20orf194Q5TEA3 1177 aa14.72□□□□□ -0.05
LDLR-212ENST00000560467 G2E3Q7L622 706 aa14.72□□□□□ -0.05
LDLR-212ENST00000560467 TTLL11Q8NHH1 800 aa14.72□□□□□ -0.05
LDLR-212ENST00000560467 EXOC6Q8TAG9 804 aa14.72□□□□□ -0.05
LDLR-212ENST00000560467 CCDC136Q96JN2 1154 aa14.72□□□□□ -0.05
LDLR-212ENST00000560467 MINPP1Q9UNW1 487 aa14.72□□□□□ -0.05
LDLR-212ENST00000560467 POLR2AP24928 1970 aaKnown RBP14.72□□□□□ -0.05
LDLR-212ENST00000560467 PI4KAP2A4QPH2 592 aa14.71□□□□□ -0.05
LDLR-212ENST00000560467 TBC1D8O95759 1140 aa14.71□□□□□ -0.05
LDLR-212ENST00000560467 MKRN3Q13064 507 aaKnown RBP14.71□□□□□ -0.05
LDLR-212ENST00000560467 TTLL12Q14166 644 aaPredicted RBP14.71□□□□□ -0.05
LDLR-212ENST00000560467 INTS3Q68E01 1043 aaKnown RBP14.71□□□□□ -0.05
LDLR-212ENST00000560467 REM2Q8IYK8 340 aaPredicted RBP14.71□□□□□ -0.05
LDLR-212ENST00000560467 TMEM57Q8N5G2 664 aa14.71□□□□□ -0.05
LDLR-212ENST00000560467 PI4KAP1Q8N8J0 262 aa14.71□□□□□ -0.05
LDLR-212ENST00000560467 DNAAF4Q8WXU2 420 aa14.71□□□□□ -0.05
LDLR-212ENST00000560467 BSDC1Q9NW68 430 aaPredicted RBP14.71□□□□□ -0.05
LDLR-212ENST00000560467 HPS5Q9UPZ3 1129 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms