RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 HMMRO75330 724 aa16.13■□□□□ 0.17
NEDD8-208ENST00000560427 VEGFAP15692 232 aaPredicted RBP16.13■□□□□ 0.17
NEDD8-208ENST00000560427 DOK7Q18PE1 504 aa16.13■□□□□ 0.17
NEDD8-208ENST00000560427 ZNF804AQ7Z570 1209 aa16.13■□□□□ 0.17
NEDD8-208ENST00000560427 SIL1Q9H173 461 aa16.13■□□□□ 0.17
NEDD8-208ENST00000560427 CEP126Q9P2H0 1117 aa16.13■□□□□ 0.17
NEDD8-208ENST00000560427 PA2G4Q9UQ80 394 aaKnown RBP16.13■□□□□ 0.17
NEDD8-208ENST00000560427 RPS12P25398 132 aaKnown RBP16.12■□□□□ 0.17
NEDD8-208ENST00000560427 TXNRD3Q86VQ6 643 aa16.12■□□□□ 0.17
NEDD8-208ENST00000560427 LPIN2Q92539 896 aa16.12■□□□□ 0.17
NEDD8-208ENST00000560427 NMRK2Q9NPI5 230 aa16.12■□□□□ 0.17
NEDD8-208ENST00000560427 NOP58Q9Y2X3 529 aaKnown RBP16.12■□□□□ 0.17
NEDD8-208ENST00000560427 SCN4AP35499 1836 aa16.12■□□□□ 0.17
NEDD8-208ENST00000560427 WTIPA6NIX2 430 aaPredicted RBP16.11■□□□□ 0.17
NEDD8-208ENST00000560427 KIF3CO14782 793 aa16.11■□□□□ 0.17
NEDD8-208ENST00000560427 RAD17O75943 681 aa16.11■□□□□ 0.17
NEDD8-208ENST00000560427 IFIT1P09914 478 aaKnown RBP16.11■□□□□ 0.17
NEDD8-208ENST00000560427 SLC5A1P13866 664 aa16.11■□□□□ 0.17
NEDD8-208ENST00000560427 FGFR2P21802 821 aa16.11■□□□□ 0.17
NEDD8-208ENST00000560427 KLRK1P26718 216 aa16.11■□□□□ 0.17
NEDD8-208ENST00000560427 LMOD1P29536 600 aaPredicted RBP16.11■□□□□ 0.17
NEDD8-208ENST00000560427 G3BP1Q13283 466 aaKnown RBP eCLIP16.11■□□□□ 0.17
NEDD8-208ENST00000560427 AKAP2Q9Y2D5 859 aa16.11■□□□□ 0.17
NEDD8-208ENST00000560427 GJA3Q9Y6H8 435 aa16.11■□□□□ 0.17
NEDD8-208ENST00000560427 PSME4Q14997 1843 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 USP17L3A6NCW0 530 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 USP17L4A6NCW7 530 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 SNAP23O00161 211 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 IL1R1P14778 569 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 AAMPQ13685 434 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 ATP2B3Q16720 1220 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 HSP90AB4PQ58FF6 505 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 CAVIN4Q5BKX8 364 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 STRIP1Q5VSL9 837 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 USP17L1Q7RTZ2 530 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 DPF2Q92785 391 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 CD209Q9NNX6 404 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 HACL1Q9UJ83 578 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 MYO3BQ8WXR4 1341 aa16.1■□□□□ 0.17
NEDD8-208ENST00000560427 PSMD14O00487 310 aa16.09■□□□□ 0.17
NEDD8-208ENST00000560427 VIL1P09327 827 aaKnown RBP16.09■□□□□ 0.17
NEDD8-208ENST00000560427 HIBADHP31937 336 aaKnown RBP16.09■□□□□ 0.17
NEDD8-208ENST00000560427 RRAGCQ9HB90 399 aa16.09■□□□□ 0.17
NEDD8-208ENST00000560427 POTECB2RU33 542 aa16.08■□□□□ 0.16
NEDD8-208ENST00000560427 ZBTB22O15209 634 aa16.08■□□□□ 0.16
NEDD8-208ENST00000560427 SURF6O75683 361 aaKnown RBP16.08■□□□□ 0.16
NEDD8-208ENST00000560427 GMPSP49915 693 aaPredicted RBP16.08■□□□□ 0.16
NEDD8-208ENST00000560427 MMP14P50281 582 aa16.08■□□□□ 0.16
NEDD8-208ENST00000560427 SCNN1DP51172 638 aa16.08■□□□□ 0.16
NEDD8-208ENST00000560427 RSBN1LQ6PCB5 846 aaPredicted RBP16.08■□□□□ 0.16
NEDD8-208ENST00000560427 VPS37DQ86XT2 251 aa16.08■□□□□ 0.16
NEDD8-208ENST00000560427 ERC1Q8IUD2 1116 aa16.08■□□□□ 0.16
NEDD8-208ENST00000560427 C16orf71Q8IYS4 520 aaPredicted RBP16.08■□□□□ 0.16
NEDD8-208ENST00000560427 AGBL3Q8NEM8 1001 aa16.08■□□□□ 0.16
NEDD8-208ENST00000560427 FAM84BQ96KN1 310 aaPredicted RBP16.08■□□□□ 0.16
NEDD8-208ENST00000560427 GPRC5DQ9NZD1 345 aa16.08■□□□□ 0.16
NEDD8-208ENST00000560427 ARAP2Q8WZ64 1704 aa16.08■□□□□ 0.16
NEDD8-208ENST00000560427 SCN9AQ15858 1988 aa16.07■□□□□ 0.16
NEDD8-208ENST00000560427 SASH1O94885 1247 aa16.07■□□□□ 0.16
NEDD8-208ENST00000560427 FKBP1AP62942 108 aaKnown RBP16.07■□□□□ 0.16
NEDD8-208ENST00000560427 OS9Q13438 667 aaPredicted RBP16.07■□□□□ 0.16
NEDD8-208ENST00000560427 FBXO33Q7Z6M2 555 aa16.07■□□□□ 0.16
NEDD8-208ENST00000560427 PNMA8AQ86V59 439 aaPredicted RBP16.07■□□□□ 0.16
NEDD8-208ENST00000560427 TDRD7Q8NHU6 1098 aaKnown RBP16.07■□□□□ 0.16
NEDD8-208ENST00000560427 TAF1DQ9H5J8 278 aaPredicted RBP16.07■□□□□ 0.16
NEDD8-208ENST00000560427 GPR108Q9NPR9 543 aa16.07■□□□□ 0.16
NEDD8-208ENST00000560427 TOMM70O94826 608 aa16.06■□□□□ 0.16
NEDD8-208ENST00000560427 EPHX2P34913 555 aa16.06■□□□□ 0.16
NEDD8-208ENST00000560427 GYG1P46976 350 aa16.06■□□□□ 0.16
NEDD8-208ENST00000560427 TFCP2Q12800 502 aa16.06■□□□□ 0.16
NEDD8-208ENST00000560427 DACT2Q5SW24 774 aa16.06■□□□□ 0.16
NEDD8-208ENST00000560427 KCNQ5Q9NR82 932 aa16.06■□□□□ 0.16
NEDD8-208ENST00000560427 FAM205AQ6ZU69 1335 aa16.05■□□□□ 0.16
NEDD8-208ENST00000560427 TTLL5Q6EMB2 1281 aa16.05■□□□□ 0.16
NEDD8-208ENST00000560427 SIRT2Q8IXJ6 389 aa16.05■□□□□ 0.16
NEDD8-208ENST00000560427 RBM46Q8TBY0 533 aaKnown RBP16.05■□□□□ 0.16
NEDD8-208ENST00000560427 CRBNQ96SW2 442 aa16.05■□□□□ 0.16
NEDD8-208ENST00000560427 ADARB2Q9NS39 739 aaKnown RBP16.05■□□□□ 0.16
NEDD8-208ENST00000560427 SUPT16HQ9Y5B9 1047 aaKnown RBP16.05■□□□□ 0.16
NEDD8-208ENST00000560427 ZNF646O15015 1829 aaPredicted RBP16.05■□□□□ 0.16
NEDD8-208ENST00000560427 A0A1B0GUL7 405 aa16.04■□□□□ 0.16
NEDD8-208ENST00000560427 H7C1D1 291 aa16.04■□□□□ 0.16
NEDD8-208ENST00000560427 SEMA3EO15041 775 aa16.04■□□□□ 0.16
NEDD8-208ENST00000560427 GTF2IP78347 998 aa16.04■□□□□ 0.16
NEDD8-208ENST00000560427 USP50Q70EL3 339 aaPredicted RBP16.04■□□□□ 0.16
NEDD8-208ENST00000560427 GNL3LQ9NVN8 582 aaKnown RBP16.04■□□□□ 0.16
NEDD8-208ENST00000560427 ZBTB12Q9Y330 459 aaPredicted RBP16.04■□□□□ 0.16
NEDD8-208ENST00000560427 RAB11FIP3O75154 756 aa16.03■□□□□ 0.16
NEDD8-208ENST00000560427 EPS15P42566 896 aa16.03■□□□□ 0.16
NEDD8-208ENST00000560427 LDHDQ86WU2 507 aa16.03■□□□□ 0.16
NEDD8-208ENST00000560427 MICALL2Q8IY33 904 aa16.03■□□□□ 0.16
NEDD8-208ENST00000560427 SMC1BQ8NDV3 1235 aa16.03■□□□□ 0.16
NEDD8-208ENST00000560427 TBC1D22AQ8WUA7 517 aa16.03■□□□□ 0.16
NEDD8-208ENST00000560427 GMLQ99445 158 aa16.03■□□□□ 0.16
NEDD8-208ENST00000560427 CNOT7Q9UIV1 285 aaKnown RBP16.03■□□□□ 0.16
NEDD8-208ENST00000560427 ADAMTSL1Q8N6G6 1762 aa16.03■□□□□ 0.16
NEDD8-208ENST00000560427 PDS5AQ29RF7 1337 aaKnown RBP16.02■□□□□ 0.16
NEDD8-208ENST00000560427 FRAT2O75474 233 aaPredicted RBP16.02■□□□□ 0.16
NEDD8-208ENST00000560427 USP17L8P0C7I0 530 aa16.02■□□□□ 0.16
NEDD8-208ENST00000560427 BCAMP50895 628 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms