RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 UBE4AQ14139 1066 aa15.24■□□□□ 0.03
USP3-213ENST00000559711 TTF1Q15361 905 aaPredicted RBP15.24■□□□□ 0.03
USP3-213ENST00000559711 TSGA10IPQ3SY00 556 aa15.24■□□□□ 0.03
USP3-213ENST00000559711 PI16Q6UXB8 463 aa15.24■□□□□ 0.03
USP3-213ENST00000559711 CNBD1Q8NA66 436 aa15.24■□□□□ 0.03
USP3-213ENST00000559711 CHMP5Q9NZZ3 219 aa15.24■□□□□ 0.03
USP3-213ENST00000559711 UBR3Q6ZT12 1888 aa15.24■□□□□ 0.03
USP3-213ENST00000559711 COL4A1P02462 1669 aa15.23■□□□□ 0.03
USP3-213ENST00000559711 SLC27A2O14975 620 aa15.23■□□□□ 0.03
USP3-213ENST00000559711 CYP2E1P05181 493 aaPredicted RBP15.23■□□□□ 0.03
USP3-213ENST00000559711 ZKSCAN1P17029 563 aaPredicted RBP15.23■□□□□ 0.03
USP3-213ENST00000559711 KCNJ4P48050 445 aa15.23■□□□□ 0.03
USP3-213ENST00000559711 PRR5LQ6MZQ0 368 aa15.23■□□□□ 0.03
USP3-213ENST00000559711 CCDC24Q8N4L8 307 aa15.23■□□□□ 0.03
USP3-213ENST00000559711 CIZ1Q9ULV3 898 aaPredicted RBP15.23■□□□□ 0.03
USP3-213ENST00000559711 ZNF827Q17R98 1081 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 RNF20Q5VTR2 975 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 CCDC129Q6ZRS4 1044 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 UPF3BQ9BZI7 483 aaKnown RBP15.22■□□□□ 0.03
USP3-213ENST00000559711 HMG20BQ9P0W2 317 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 U3KPZ7 1027 aaPredicted RBP15.22■□□□□ 0.03
USP3-213ENST00000559711 NPHP1O15259 732 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 SERPINB2P05120 415 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 HSP90AA1P07900 732 aaKnown RBP15.22■□□□□ 0.03
USP3-213ENST00000559711 SLFNL1Q499Z3 407 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 ZSCAN25Q6NSZ9 544 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 OSBP2Q969R2 916 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 TTC14Q96N46 770 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 DSCC1Q9BVC3 393 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.22■□□□□ 0.038e-7■□□□□ 9.6
USP3-213ENST00000559711 ZSWIM6Q9HCJ5 1215 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 TFCP2L1Q9NZI6 479 aa15.22■□□□□ 0.03
USP3-213ENST00000559711 MAST3O60307 1309 aa15.21■□□□□ 0.03
USP3-213ENST00000559711 BCAMP50895 628 aa15.21■□□□□ 0.03
USP3-213ENST00000559711 SPATA5Q8NB90 893 aa15.21■□□□□ 0.03
USP3-213ENST00000559711 FLAD1Q8NFF5 587 aa15.21■□□□□ 0.03
USP3-213ENST00000559711 APPBP2Q92624 585 aa15.21■□□□□ 0.03
USP3-213ENST00000559711 ANKRD2Q9GZV1 360 aa15.21■□□□□ 0.03
USP3-213ENST00000559711 PIH1D3Q9NQM4 214 aaKnown RBP15.21■□□□□ 0.03
USP3-213ENST00000559711 ZNF804BA4D1E1 1349 aa15.21■□□□□ 0.02
USP3-213ENST00000559711 RASGRF1Q13972 1273 aa15.2■□□□□ 0.02
USP3-213ENST00000559711 ADCK5Q3MIX3 580 aa15.2■□□□□ 0.02
USP3-213ENST00000559711 TMX3Q96JJ7 454 aa15.2■□□□□ 0.02
USP3-213ENST00000559711 M0R2C6 588 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 POLRMTO00411 1230 aaKnown RBP15.19■□□□□ 0.02
USP3-213ENST00000559711 PSMA5P28066 241 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 ADD2P35612 726 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 ST5P78524 1137 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 DDR1Q08345 913 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 GRAPQ13588 217 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 CUL4AQ13619 759 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 UBE3CQ15386 1083 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 NFKBIBQ15653 356 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 CRY2Q49AN0 593 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 GRAPLQ8TC17 118 aaPredicted RBP15.19■□□□□ 0.02
USP3-213ENST00000559711 JAKMIP1Q96N16 626 aaKnown RBP15.19■□□□□ 0.02
USP3-213ENST00000559711 ARAP2Q8WZ64 1704 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 RPAP1Q9BWH6 1393 aaPredicted RBP15.19■□□□□ 0.02
USP3-213ENST00000559711 KLRG2A4D1S0 409 aaPredicted RBP15.19■□□□□ 0.02
USP3-213ENST00000559711 HSPD1P10809 573 aaKnown RBP15.19■□□□□ 0.02
USP3-213ENST00000559711 CASTP20810 708 aaKnown RBP15.19■□□□□ 0.02
USP3-213ENST00000559711 VPS53Q5VIR6 699 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 COL23A1Q86Y22 540 aaPredicted RBP15.19■□□□□ 0.02
USP3-213ENST00000559711 NLGN1Q8N2Q7 840 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 CWC22Q9HCG8 908 aaKnown RBP15.19■□□□□ 0.02
USP3-213ENST00000559711 CYP46A1Q9Y6A2 500 aa15.19■□□□□ 0.02
USP3-213ENST00000559711 ZBTB22O15209 634 aa15.18■□□□□ 0.02
USP3-213ENST00000559711 KRT32Q14532 448 aa15.18■□□□□ 0.02
USP3-213ENST00000559711 NBR1Q14596 966 aa15.18■□□□□ 0.02
USP3-213ENST00000559711 WASHC4Q2M389 1173 aa15.18■□□□□ 0.02
USP3-213ENST00000559711 SLC9C2Q5TAH2 1124 aa15.18■□□□□ 0.02
USP3-213ENST00000559711 RUFY3Q7L099 469 aa15.18■□□□□ 0.02
USP3-213ENST00000559711 FBXO33Q7Z6M2 555 aa15.18■□□□□ 0.02
USP3-213ENST00000559711 WTIPA6NIX2 430 aaPredicted RBP15.17■□□□□ 0.02
USP3-213ENST00000559711 CAVIN4Q5BKX8 364 aa15.17■□□□□ 0.02
USP3-213ENST00000559711 INTS4Q96HW7 963 aaKnown RBP15.17■□□□□ 0.02
USP3-213ENST00000559711 FAM84BQ96KN1 310 aaPredicted RBP15.17■□□□□ 0.02
USP3-213ENST00000559711 PUS7LQ9H0K6 701 aaKnown RBP15.17■□□□□ 0.02
USP3-213ENST00000559711 ALDH8A1Q9H2A2 487 aaPredicted RBP15.17■□□□□ 0.02
USP3-213ENST00000559711 FOXD4L1Q9NU39 408 aa15.17■□□□□ 0.02
USP3-213ENST00000559711 GNL3LQ9NVN8 582 aaKnown RBP15.17■□□□□ 0.02
USP3-213ENST00000559711 TAF6LQ9Y6J9 622 aa15.17■□□□□ 0.02
USP3-213ENST00000559711 AKAP11Q9UKA4 1901 aa15.17■□□□□ 0.02
USP3-213ENST00000559711 TCRBV5S4A2TA0A5A2 114 aa15.16■□□□□ 0.02
USP3-213ENST00000559711 IDH1O75874 414 aaKnown RBP15.16■□□□□ 0.02
USP3-213ENST00000559711 CYP21A2P08686 494 aa15.16■□□□□ 0.02
USP3-213ENST00000559711 PDE6AP16499 860 aa15.16■□□□□ 0.02
USP3-213ENST00000559711 AK2P54819 239 aa15.16■□□□□ 0.02
USP3-213ENST00000559711 PDRG1Q9NUG6 133 aa15.16■□□□□ 0.02
USP3-213ENST00000559711 FOXP2O15409 715 aa15.16■□□□□ 0.02
USP3-213ENST00000559711 CPA1P15085 419 aa15.16■□□□□ 0.02
USP3-213ENST00000559711 HOXA10P31260 410 aaPredicted RBP15.16■□□□□ 0.02
USP3-213ENST00000559711 GYG1P46976 350 aa15.16■□□□□ 0.02
USP3-213ENST00000559711 MAP3K12Q12852 859 aa15.16■□□□□ 0.02
USP3-213ENST00000559711 LIMCH1Q9UPQ0 1083 aa15.16■□□□□ 0.02
USP3-213ENST00000559711 TNRC6CQ9HCJ0 1690 aaKnown RBP15.15■□□□□ 0.02
USP3-213ENST00000559711 BLOC1S2Q6QNY1 142 aa15.15■□□□□ 0.02
USP3-213ENST00000559711 RPGRQ92834 1020 aaKnown RBP15.15■□□□□ 0.02
USP3-213ENST00000559711 RBM17Q96I25 401 aaKnown RBP15.15■□□□□ 0.02
USP3-213ENST00000559711 WWC3Q9ULE0 1092 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 135.4 ms