RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	USP17L4	A6NCW7	530 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	HTRA3	P83110	453 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	USP17L1	Q7RTZ2	530 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	PODN	Q7Z5L7	613 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	LDHD	Q86WU2	507 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	MICALL2	Q8IY33	904 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	PANK1	Q8TE04	598 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	MXD3	Q9BW11	206 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	COA1	Q9GZY4	146 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	C1orf115	Q9H7X2	142 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	PA2G4	Q9UQ80	394 aa	Known RBP	13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	JAG2	Q9Y219	1238 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	MED23	Q9ULK4	1368 aa		13.79	□□□□□ -0.2
DDB1-222	ENST00000543627	GNAI2	P04899	355 aa		13.78	□□□□□ -0.2
DDB1-222	ENST00000543627	GTF2I	P78347	998 aa		13.78	□□□□□ -0.2
DDB1-222	ENST00000543627	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.78	□□□□□ -0.2
DDB1-222	ENST00000543627	SAMD7	Q7Z3H4	446 aa		13.78	□□□□□ -0.2
DDB1-222	ENST00000543627	VPS37D	Q86XT2	251 aa		13.78	□□□□□ -0.2
DDB1-222	ENST00000543627	ADARB2	Q9NS39	739 aa	Known RBP	13.78	□□□□□ -0.2
DDB1-222	ENST00000543627	RIPOR2	Q9Y4F9	1068 aa		13.78	□□□□□ -0.2
DDB1-222	ENST00000543627	MROH5	Q6ZUA9	1318 aa		13.78	□□□□□ -0.2
DDB1-222	ENST00000543627	SRGAP3	O43295	1099 aa		13.77	□□□□□ -0.21
DDB1-222	ENST00000543627	FRAT2	O75474	233 aa	Predicted RBP	13.77	□□□□□ -0.21
DDB1-222	ENST00000543627	RLBP1	P12271	317 aa		13.77	□□□□□ -0.21
DDB1-222	ENST00000543627	GYG1	P46976	350 aa		13.77	□□□□□ -0.21
DDB1-222	ENST00000543627	TTLL5	Q6EMB2	1281 aa		13.77	□□□□□ -0.21
DDB1-222	ENST00000543627	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.77	□□□□□ -0.21
DDB1-222	ENST00000543627	ZNF804A	Q7Z570	1209 aa		13.77	□□□□□ -0.21
DDB1-222	ENST00000543627	CNTROB	Q8N137	903 aa		13.77	□□□□□ -0.21
DDB1-222	ENST00000543627	CD209	Q9NNX6	404 aa		13.77	□□□□□ -0.21
DDB1-222	ENST00000543627	EYA2	O00167	538 aa		13.76	□□□□□ -0.21
DDB1-222	ENST00000543627	VIL1	P09327	827 aa	Known RBP	13.76	□□□□□ -0.21
DDB1-222	ENST00000543627	RFX5	P48382	616 aa	Predicted RBP	13.76	□□□□□ -0.21
DDB1-222	ENST00000543627	PTPN12	Q05209	780 aa	Known RBP	13.76	□□□□□ -0.21
DDB1-222	ENST00000543627	USP50	Q70EL3	339 aa	Predicted RBP	13.76	□□□□□ -0.21
DDB1-222	ENST00000543627	TRPM4	Q8TD43	1214 aa		13.76	□□□□□ -0.21
DDB1-222	ENST00000543627	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.76	□□□□□ -0.21
DDB1-222	ENST00000543627	SCN4A	P35499	1836 aa		13.76	□□□□□ -0.21
DDB1-222	ENST00000543627		F8W031	263 aa	Predicted RBP	13.75	□□□□□ -0.21
DDB1-222	ENST00000543627	PDE8B	O95263	885 aa		13.75	□□□□□ -0.21
DDB1-222	ENST00000543627	MS4A1	P11836	297 aa		13.75	□□□□□ -0.21
DDB1-222	ENST00000543627	HIBADH	P31937	336 aa	Known RBP	13.75	□□□□□ -0.21
DDB1-222	ENST00000543627	APLP1	P51693	650 aa		13.75	□□□□□ -0.21
DDB1-222	ENST00000543627	UBE4A	Q14139	1066 aa		13.75	□□□□□ -0.21
DDB1-222	ENST00000543627	CEP126	Q9P2H0	1117 aa		13.75	□□□□□ -0.21
DDB1-222	ENST00000543627	LTBP1	Q14766	1721 aa		13.75	□□□□□ -0.21
DDB1-222	ENST00000543627	RPS12	P25398	132 aa	Known RBP	13.74	□□□□□ -0.21
DDB1-222	ENST00000543627	CHAF1A	Q13111	956 aa	Predicted RBP	13.74	□□□□□ -0.21
DDB1-222	ENST00000543627	CAVIN4	Q5BKX8	364 aa		13.74	□□□□□ -0.21
DDB1-222	ENST00000543627	KIAA0825	Q8IV33	1275 aa		13.74	□□□□□ -0.21
DDB1-222	ENST00000543627	DPF2	Q92785	391 aa		13.74	□□□□□ -0.21
DDB1-222	ENST00000543627	BCL11A	Q9H165	835 aa		13.74	□□□□□ -0.21
DDB1-222	ENST00000543627	COG6	Q9Y2V7	657 aa		13.74	□□□□□ -0.21
DDB1-222	ENST00000543627	EGFR	P00533	1210 aa		13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	IFIT1	P09914	478 aa	Known RBP	13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	USP17L8	P0C7I0	530 aa		13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	HIRA	P54198	1017 aa	Predicted RBP	13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	FMR1	Q06787	632 aa	Known RBP eCLIP	13.73	□□□□□ -0.21	7e-8	■■□□□ 13.9
DDB1-222	ENST00000543627	OS9	Q13438	667 aa	Predicted RBP	13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	KIF4B	Q2VIQ3	1234 aa		13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	STRIP1	Q5VSL9	837 aa		13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	OGFOD1	Q8N543	542 aa		13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	AGBL3	Q8NEM8	1001 aa		13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	ZNF408	Q9H9D4	720 aa		13.73	□□□□□ -0.21
DDB1-222	ENST00000543627	PNMA6E	A0A0J9YXQ4	647 aa		13.72	□□□□□ -0.21
DDB1-222	ENST00000543627	TRAF5	O00463	557 aa		13.72	□□□□□ -0.21
DDB1-222	ENST00000543627	ZBTB7B	O15156	539 aa	Predicted RBP	13.72	□□□□□ -0.21
DDB1-222	ENST00000543627	SLC5A1	P13866	664 aa		13.72	□□□□□ -0.21
DDB1-222	ENST00000543627	BCAM	P50895	628 aa		13.72	□□□□□ -0.21
DDB1-222	ENST00000543627	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.72	□□□□□ -0.21	6e-9	■■■□□ 17.2
DDB1-222	ENST00000543627	PUM3	Q15397	648 aa	Known RBP	13.72	□□□□□ -0.21
DDB1-222	ENST00000543627	DACT2	Q5SW24	774 aa		13.72	□□□□□ -0.21
DDB1-222	ENST00000543627	ATG9A	Q7Z3C6	839 aa		13.72	□□□□□ -0.21
DDB1-222	ENST00000543627	FAM84B	Q96KN1	310 aa	Predicted RBP	13.72	□□□□□ -0.21
DDB1-222	ENST00000543627	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.72	□□□□□ -0.21
DDB1-222	ENST00000543627	SCN9A	Q15858	1988 aa		13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	IL15	P40933	162 aa	Predicted RBP	13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	RBM5	P52756	815 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	SCARF1	Q14162	830 aa		13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	ATP2B3	Q16720	1220 aa		13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	USP48	Q86UV5	1035 aa		13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	DCPS	Q96C86	337 aa	Known RBP	13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	NEUROD6	Q96NK8	337 aa		13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	MYOZ2	Q9NPC6	264 aa		13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	HDAC9	Q9UKV0	1011 aa		13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	SCAF8	Q9UPN6	1271 aa	Known RBP	13.71	□□□□□ -0.21
DDB1-222	ENST00000543627	CIAO1	O76071	339 aa		13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	ITGBL1	O95965	494 aa	Predicted RBP	13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	IL1R1	P14778	569 aa		13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	TIMM10	P62072	90 aa		13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	ATP8B2	P98198	1209 aa		13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	TFCP2	Q12800	502 aa		13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	DLK2	Q6UY11	383 aa		13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	C15orf52	Q6ZUT6	534 aa	Known RBP	13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	VGLL2	Q8N8G2	317 aa		13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	LPIN2	Q92539	896 aa		13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	COPRS	Q9NQ92	184 aa		13.7	□□□□□ -0.22
DDB1-222	ENST00000543627	ASTN2	O75129	1339 aa	Predicted RBP	13.69	□□□□□ -0.22
DDB1-222	ENST00000543627	MYO3B	Q8WXR4	1341 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms