RNA–Protein interactions for RNA: ENST00000535810.1

CHD4-204, Transcript of chromodomain helicase DNA binding protein 4, human

TSL 2

Gene CHD4, Length 607 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD4-204	ENST00000535810	SPEF2	Q9C093	1822 aa		11.22	□□□□□ -0.61
CHD4-204	ENST00000535810	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.22	□□□□□ -0.61
CHD4-204	ENST00000535810	MINPP1	Q9UNW1	487 aa		11.22	□□□□□ -0.61
CHD4-204	ENST00000535810	PSMD14	O00487	310 aa		11.21	□□□□□ -0.61
CHD4-204	ENST00000535810	IGHMBP2	P38935	993 aa	Known RBP	11.21	□□□□□ -0.61
CHD4-204	ENST00000535810	FOXO4	P98177	505 aa		11.21	□□□□□ -0.61
CHD4-204	ENST00000535810	SLC4A10	Q6U841	1118 aa		11.21	□□□□□ -0.61
CHD4-204	ENST00000535810	CNTROB	Q8N137	903 aa		11.21	□□□□□ -0.61
CHD4-204	ENST00000535810	BCL2L13	Q9BXK5	485 aa		11.21	□□□□□ -0.61
CHD4-204	ENST00000535810	SRCIN1	Q9C0H9	1055 aa		11.21	□□□□□ -0.61
CHD4-204	ENST00000535810	ADARB2	Q9NS39	739 aa	Known RBP	11.21	□□□□□ -0.61
CHD4-204	ENST00000535810	SCN9A	Q15858	1988 aa		11.21	□□□□□ -0.62
CHD4-204	ENST00000535810	PTPRC	P08575	1304 aa		11.2	□□□□□ -0.62
CHD4-204	ENST00000535810	SHTN1	A0MZ66	631 aa		11.2	□□□□□ -0.62
CHD4-204	ENST00000535810	WTIP	A6NIX2	430 aa	Predicted RBP	11.2	□□□□□ -0.62
CHD4-204	ENST00000535810	CCDC85C	A6NKD9	419 aa		11.2	□□□□□ -0.62
CHD4-204	ENST00000535810	HSPA8	P11142	646 aa	Known RBP	11.2	□□□□□ -0.62
CHD4-204	ENST00000535810	ATP2B4	P23634	1241 aa		11.2	□□□□□ -0.62
CHD4-204	ENST00000535810	EPHA10	Q5JZY3	1008 aa		11.2	□□□□□ -0.62
CHD4-204	ENST00000535810	DIEXF	Q68CQ4	756 aa	Known RBP	11.2	□□□□□ -0.62
CHD4-204	ENST00000535810	KCNQ5	Q9NR82	932 aa		11.2	□□□□□ -0.62
CHD4-204	ENST00000535810	MED23	Q9ULK4	1368 aa		11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	ANKRD18B	A2A2Z9	1011 aa		11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	TMEM88B	A6NKF7	163 aa		11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	RIOK3	O14730	519 aa	Known RBP	11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	MAP2K1	Q02750	393 aa	Predicted RBP	11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	ALDH1L2	Q3SY69	923 aa		11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	MICALL2	Q8IY33	904 aa		11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	TRPM4	Q8TD43	1214 aa		11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	DPF2	Q92785	391 aa		11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	MPHOSPH8	Q99549	860 aa		11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	C9orf78	Q9NZ63	289 aa	Predicted RBP	11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.19	□□□□□ -0.62
CHD4-204	ENST00000535810	UTY	O14607	1347 aa		11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	CT47B1	P0C2W7	299 aa	Predicted RBP	11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	RPS12	P25398	132 aa	Known RBP	11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	CCT4	P50991	539 aa	Known RBP	11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	HIRA	P54198	1017 aa	Predicted RBP	11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	IFIT5	Q13325	482 aa	Known RBP	11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	LMBR1L	Q6UX01	489 aa		11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	SMC4	Q9NTJ3	1288 aa		11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	CNOT7	Q9UIV1	285 aa	Known RBP	11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	CHMP3	Q9Y3E7	222 aa		11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	ZNF609	O15014	1411 aa		11.18	□□□□□ -0.62
CHD4-204	ENST00000535810	ZNF804B	A4D1E1	1349 aa		11.17	□□□□□ -0.62
CHD4-204	ENST00000535810		G3V3G9	751 aa		11.17	□□□□□ -0.62
CHD4-204	ENST00000535810	VIL1	P09327	827 aa	Known RBP	11.17	□□□□□ -0.62
CHD4-204	ENST00000535810	CHRM1	P11229	460 aa	Predicted RBP	11.17	□□□□□ -0.62
CHD4-204	ENST00000535810	KLRK1	P26718	216 aa		11.17	□□□□□ -0.62
CHD4-204	ENST00000535810	CHRND	Q07001	517 aa		11.17	□□□□□ -0.62
CHD4-204	ENST00000535810	KAZALD1	Q96I82	304 aa		11.17	□□□□□ -0.62
CHD4-204	ENST00000535810	SUCLG2	Q96I99	432 aa		11.17	□□□□□ -0.62
CHD4-204	ENST00000535810	ANKRD2	Q9GZV1	360 aa		11.17	□□□□□ -0.62
CHD4-204	ENST00000535810	LEMD3	Q9Y2U8	911 aa		11.17	□□□□□ -0.62
CHD4-204	ENST00000535810	PSME4	Q14997	1843 aa		11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	RASSF10	A6NK89	507 aa		11.16	□□□□□ -0.62
CHD4-204	ENST00000535810		H7C1D1	291 aa		11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	TRAF5	O00463	557 aa		11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	EGFR	P00533	1210 aa		11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	CCDC57	Q2TAC2	916 aa		11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	SAMD7	Q7Z3H4	446 aa		11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	PODN	Q7Z5L7	613 aa		11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	TXNRD3	Q86VQ6	643 aa		11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	ZC3H15	Q8WU90	426 aa	Known RBP	11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	PGAP2	Q9UHJ9	254 aa		11.16	□□□□□ -0.62
CHD4-204	ENST00000535810	IRS2	Q9Y4H2	1338 aa		11.15	□□□□□ -0.62
CHD4-204	ENST00000535810	BRPF1	P55201	1214 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD4-204	ENST00000535810	FMR1	Q06787	632 aa	Known RBP eCLIP	11.15	□□□□□ -0.62	4e-8	■■■■□ 22.9
CHD4-204	ENST00000535810	DEFB115	Q30KQ5	88 aa		11.15	□□□□□ -0.62
CHD4-204	ENST00000535810	RABL6	Q3YEC7	729 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD4-204	ENST00000535810	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD4-204	ENST00000535810	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD4-204	ENST00000535810	ZNF594	Q96JF6	807 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD4-204	ENST00000535810	GLIS2	Q9BZE0	524 aa	Predicted RBP	11.15	□□□□□ -0.62
CHD4-204	ENST00000535810	COA1	Q9GZY4	146 aa		11.15	□□□□□ -0.62
CHD4-204	ENST00000535810	BICC1	Q9H694	974 aa	Known RBP	11.15	□□□□□ -0.62
CHD4-204	ENST00000535810		A0A1B0GUL6	1792 aa		11.15	□□□□□ -0.62
CHD4-204	ENST00000535810	USP17L3	A6NCW0	530 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	USP17L4	A6NCW7	530 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	SNAP23	O00161	211 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	TAF5L	O75529	589 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	KCNJ4	P48050	445 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	ZNF280A	P59817	542 aa	Predicted RBP	11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	TAF7L	Q5H9L4	462 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	USP17L1	Q7RTZ2	530 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	ANKRD44	Q8N8A2	993 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	AGBL3	Q8NEM8	1001 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	HELB	Q8NG08	1087 aa	Predicted RBP	11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	GML	Q99445	158 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	USP44	Q9H0E7	712 aa		11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	ZNF646	O15015	1829 aa	Predicted RBP	11.14	□□□□□ -0.63
CHD4-204	ENST00000535810	WDR33	Q9C0J8	1336 aa	Known RBP	11.13	□□□□□ -0.63
CHD4-204	ENST00000535810	RARS	P54136	660 aa	Known RBP	11.13	□□□□□ -0.63
CHD4-204	ENST00000535810	KIF4B	Q2VIQ3	1234 aa		11.13	□□□□□ -0.63
CHD4-204	ENST00000535810	DACT2	Q5SW24	774 aa		11.13	□□□□□ -0.63
CHD4-204	ENST00000535810	CST9	Q5W186	159 aa		11.13	□□□□□ -0.63
CHD4-204	ENST00000535810	LDHAL6A	Q6ZMR3	332 aa		11.13	□□□□□ -0.63
CHD4-204	ENST00000535810	C15orf52	Q6ZUT6	534 aa	Known RBP	11.13	□□□□□ -0.63

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