RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 ZBTB12Q9Y330 459 aaPredicted RBP16.65■□□□□ 0.26
VPS28-210ENST00000529182 SCN9AQ15858 1988 aa16.65■□□□□ 0.26
VPS28-210ENST00000529182 IQCA1LA6NCM1 817 aa16.64■□□□□ 0.25
VPS28-210ENST00000529182 POTEIP0CG38 1075 aa16.64■□□□□ 0.25
VPS28-210ENST00000529182 POTEJP0CG39 1038 aa16.64■□□□□ 0.25
VPS28-210ENST00000529182 EPS15P42566 896 aa16.64■□□□□ 0.25
VPS28-210ENST00000529182 RRP1P56182 461 aaKnown RBP16.64■□□□□ 0.25
VPS28-210ENST00000529182 UBE4AQ14139 1066 aa16.64■□□□□ 0.25
VPS28-210ENST00000529182 COA1Q9GZY4 146 aa16.64■□□□□ 0.25
VPS28-210ENST00000529182 TAF1DQ9H5J8 278 aaPredicted RBP16.64■□□□□ 0.25
VPS28-210ENST00000529182 HACL1Q9UJ83 578 aa16.64■□□□□ 0.25
VPS28-210ENST00000529182 SHTN1A0MZ66 631 aa16.63■□□□□ 0.25
VPS28-210ENST00000529182 CIAO1O76071 339 aa16.63■□□□□ 0.25
VPS28-210ENST00000529182 PDE8BO95263 885 aa16.63■□□□□ 0.25
VPS28-210ENST00000529182 ATP8B2P98198 1209 aa16.63■□□□□ 0.25
VPS28-210ENST00000529182 C15orf52Q6ZUT6 534 aaKnown RBP16.63■□□□□ 0.25
VPS28-210ENST00000529182 PODNQ7Z5L7 613 aa16.63■□□□□ 0.25
VPS28-210ENST00000529182 TOMM70O94826 608 aa16.62■□□□□ 0.25
VPS28-210ENST00000529182 LMOD1P29536 600 aaPredicted RBP16.62■□□□□ 0.25
VPS28-210ENST00000529182 EPHX2P34913 555 aa16.62■□□□□ 0.25
VPS28-210ENST00000529182 GYG1P46976 350 aa16.62■□□□□ 0.25
VPS28-210ENST00000529182 CEP85Q6P2H3 762 aa16.62■□□□□ 0.25
VPS28-210ENST00000529182 FBXW7Q969H0 707 aa16.62■□□□□ 0.25
VPS28-210ENST00000529182 MXD3Q9BW11 206 aa16.62■□□□□ 0.25
VPS28-210ENST00000529182 CD209Q9NNX6 404 aa16.62■□□□□ 0.25
VPS28-210ENST00000529182 GPRC5DQ9NZD1 345 aa16.62■□□□□ 0.25
VPS28-210ENST00000529182 FBXO3Q9UK99 471 aa16.62■□□□□ 0.25
VPS28-210ENST00000529182 USP17L3A6NCW0 530 aa16.61■□□□□ 0.25
VPS28-210ENST00000529182 USP17L4A6NCW7 530 aa16.61■□□□□ 0.25
VPS28-210ENST00000529182 VIL1P09327 827 aaKnown RBP16.61■□□□□ 0.25
VPS28-210ENST00000529182 IL15P40933 162 aaPredicted RBP16.61■□□□□ 0.25
VPS28-210ENST00000529182 C1QTNF8P60827 252 aa16.61■□□□□ 0.25
VPS28-210ENST00000529182 POLA2Q14181 598 aa16.61■□□□□ 0.25
VPS28-210ENST00000529182 PUM3Q15397 648 aaKnown RBP16.61■□□□□ 0.25
VPS28-210ENST00000529182 EAPPQ56P03 285 aaPredicted RBP16.61■□□□□ 0.25
VPS28-210ENST00000529182 USP17L1Q7RTZ2 530 aa16.61■□□□□ 0.25
VPS28-210ENST00000529182 ZNF804AQ7Z570 1209 aa16.61■□□□□ 0.25
VPS28-210ENST00000529182 SSH3Q8TE77 659 aa16.61■□□□□ 0.25
VPS28-210ENST00000529182 FAM84BQ96KN1 310 aaPredicted RBP16.61■□□□□ 0.25
VPS28-210ENST00000529182 ZBTB40Q9NUA8 1239 aa16.61■□□□□ 0.25
VPS28-210ENST00000529182 SCN4AP35499 1836 aa16.61■□□□□ 0.25
VPS28-210ENST00000529182 FGFR2P21802 821 aa16.6■□□□□ 0.25
VPS28-210ENST00000529182 RSBN1LQ6PCB5 846 aaPredicted RBP16.6■□□□□ 0.25
VPS28-210ENST00000529182 RBM46Q8TBY0 533 aaKnown RBP16.6■□□□□ 0.25
VPS28-210ENST00000529182 CEP126Q9P2H0 1117 aa16.6■□□□□ 0.25
VPS28-210ENST00000529182 JAG2Q9Y219 1238 aa16.6■□□□□ 0.25
VPS28-210ENST00000529182 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.6■□□□□ 0.25
VPS28-210ENST00000529182 HIBADHP31937 336 aaKnown RBP16.59■□□□□ 0.25
VPS28-210ENST00000529182 GTF2IP78347 998 aa16.59■□□□□ 0.25
VPS28-210ENST00000529182 TFCP2Q12800 502 aa16.59■□□□□ 0.25
VPS28-210ENST00000529182 MICALL2Q8IY33 904 aa16.59■□□□□ 0.25
VPS28-210ENST00000529182 CNOT7Q9UIV1 285 aaKnown RBP16.59■□□□□ 0.25
VPS28-210ENST00000529182 IL1R1P14778 569 aa16.58■□□□□ 0.24
VPS28-210ENST00000529182 BCAMP50895 628 aa16.58■□□□□ 0.24
VPS28-210ENST00000529182 ATP2B3Q16720 1220 aa16.58■□□□□ 0.24
VPS28-210ENST00000529182 DACT2Q5SW24 774 aa16.58■□□□□ 0.24
VPS28-210ENST00000529182 TTLL5Q6EMB2 1281 aa16.58■□□□□ 0.24
VPS28-210ENST00000529182 LPIN2Q92539 896 aa16.58■□□□□ 0.24
VPS28-210ENST00000529182 DPF2Q92785 391 aa16.58■□□□□ 0.24
VPS28-210ENST00000529182 IQSEC3Q9UPP2 1182 aaPredicted RBP16.58■□□□□ 0.24
VPS28-210ENST00000529182 PSME4Q14997 1843 aa16.57■□□□□ 0.24
VPS28-210ENST00000529182 IFIT1P09914 478 aaKnown RBP16.57■□□□□ 0.24
VPS28-210ENST00000529182 SLC5A1P13866 664 aa16.57■□□□□ 0.24
VPS28-210ENST00000529182 RPS12P25398 132 aaKnown RBP16.57■□□□□ 0.24
VPS28-210ENST00000529182 G3BP1Q13283 466 aaKnown RBP eCLIP16.57■□□□□ 0.24
VPS28-210ENST00000529182 STRIP1Q5VSL9 837 aa16.57■□□□□ 0.24
VPS28-210ENST00000529182 FBXO33Q7Z6M2 555 aa16.57■□□□□ 0.24
VPS28-210ENST00000529182 VPS37DQ86XT2 251 aa16.57■□□□□ 0.24
VPS28-210ENST00000529182 TRPM4Q8TD43 1214 aa16.57■□□□□ 0.24
VPS28-210ENST00000529182 ADARB2Q9NS39 739 aaKnown RBP16.57■□□□□ 0.24
VPS28-210ENST00000529182 CLEC11AQ9Y240 323 aa16.57■□□□□ 0.24
VPS28-210ENST00000529182 ZNF646O15015 1829 aaPredicted RBP16.56■□□□□ 0.24
VPS28-210ENST00000529182 SURF6O75683 361 aaKnown RBP16.56■□□□□ 0.24
VPS28-210ENST00000529182 SASH1O94885 1247 aa16.56■□□□□ 0.24
VPS28-210ENST00000529182 EGFRP00533 1210 aa16.56■□□□□ 0.24
VPS28-210ENST00000529182 CAVIN4Q5BKX8 364 aa16.56■□□□□ 0.24
VPS28-210ENST00000529182 SAMD7Q7Z3H4 446 aa16.56■□□□□ 0.24
VPS28-210ENST00000529182 LDHDQ86WU2 507 aa16.56■□□□□ 0.24
VPS28-210ENST00000529182 SIRT2Q8IXJ6 389 aa16.56■□□□□ 0.24
VPS28-210ENST00000529182 SMC1BQ8NDV3 1235 aa16.56■□□□□ 0.24
VPS28-210ENST00000529182 TDRD7Q8NHU6 1098 aaKnown RBP16.56■□□□□ 0.24
VPS28-210ENST00000529182 GMLQ99445 158 aa16.56■□□□□ 0.24
VPS28-210ENST00000529182 CHMP4BQ9H444 224 aaKnown RBP16.56■□□□□ 0.24
VPS28-210ENST00000529182 H7C1D1 291 aa16.55■□□□□ 0.24
VPS28-210ENST00000529182 ADORA1P30542 326 aa16.55■□□□□ 0.24
VPS28-210ENST00000529182 HIRAP54198 1017 aaPredicted RBP16.55■□□□□ 0.24
VPS28-210ENST00000529182 TIMM10P62072 90 aa16.55■□□□□ 0.24
VPS28-210ENST00000529182 OS9Q13438 667 aaPredicted RBP16.55■□□□□ 0.24
VPS28-210ENST00000529182 TBC1D10BQ4KMP7 808 aaPredicted RBP16.55■□□□□ 0.24
VPS28-210ENST00000529182 RBM26Q5T8P6 1007 aaKnown RBP16.55■□□□□ 0.24
VPS28-210ENST00000529182 USP50Q70EL3 339 aaPredicted RBP16.55■□□□□ 0.24
VPS28-210ENST00000529182 PNMA8AQ86V59 439 aaPredicted RBP16.55■□□□□ 0.24
VPS28-210ENST00000529182 AGBL3Q8NEM8 1001 aa16.55■□□□□ 0.24
VPS28-210ENST00000529182 ZNF609O15014 1411 aa16.54■□□□□ 0.24
VPS28-210ENST00000529182 ADAMTSL1Q8N6G6 1762 aa16.54■□□□□ 0.24
VPS28-210ENST00000529182 A0A1B0GUL7 405 aa16.54■□□□□ 0.24
VPS28-210ENST00000529182 CHADLQ6NUI6 762 aa16.54■□□□□ 0.24
VPS28-210ENST00000529182 RPAP2Q8IXW5 612 aaPredicted RBP16.54■□□□□ 0.24
VPS28-210ENST00000529182 CERS5Q8N5B7 392 aa16.54■□□□□ 0.24
VPS28-210ENST00000529182 CRBNQ96SW2 442 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms