RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 BCAMP50895 628 aa25.43■■□□□ 1.66
VPS28-208ENST00000527797 CAVIN4Q5BKX8 364 aa25.43■■□□□ 1.66
VPS28-208ENST00000527797 ANKIB1Q9P2G1 1089 aa25.43■■□□□ 1.66
VPS28-208ENST00000527797 AK9Q5TCS8 1911 aa25.43■■□□□ 1.66
VPS28-208ENST00000527797 ARAP2Q8WZ64 1704 aa25.42■■□□□ 1.66
VPS28-208ENST00000527797 MASTLQ96GX5 879 aa25.42■■□□□ 1.66
VPS28-208ENST00000527797 ALDH1B1P30837 517 aa25.41■■□□□ 1.66
VPS28-208ENST00000527797 NMIQ13287 307 aaPredicted RBP25.41■■□□□ 1.66
VPS28-208ENST00000527797 ANTXR1Q9H6X2 564 aa25.41■■□□□ 1.66
VPS28-208ENST00000527797 ANO2Q9NQ90 1003 aa25.41■■□□□ 1.66
VPS28-208ENST00000527797 LEMD3Q9Y2U8 911 aa25.41■■□□□ 1.66
VPS28-208ENST00000527797 ZNF804BA4D1E1 1349 aa25.41■■□□□ 1.66
VPS28-208ENST00000527797 XDHP47989 1333 aa25.41■■□□□ 1.66
VPS28-208ENST00000527797 TTF1Q15361 905 aaPredicted RBP25.41■■□□□ 1.66
VPS28-208ENST00000527797 LRRFIP1Q32MZ4 808 aaKnown RBP25.41■■□□□ 1.66
VPS28-208ENST00000527797 IL25Q9H293 177 aa25.41■■□□□ 1.66
VPS28-208ENST00000527797 GNL3LQ9NVN8 582 aaKnown RBP25.41■■□□□ 1.66
VPS28-208ENST00000527797 ANKRD31Q8N7Z5 1873 aa25.4■■□□□ 1.66
VPS28-208ENST00000527797 RAD50Q92878 1312 aa25.4■■□□□ 1.66
VPS28-208ENST00000527797 WTIPA6NIX2 430 aaPredicted RBP25.4■■□□□ 1.66
VPS28-208ENST00000527797 PI16Q6UXB8 463 aa25.4■■□□□ 1.66
VPS28-208ENST00000527797 KIAA1211Q6ZU35 1233 aa25.4■■□□□ 1.66
VPS28-208ENST00000527797 PPEF1O14829 653 aaPredicted RBP25.39■■□□□ 1.66
VPS28-208ENST00000527797 EPB41L2O43491 1005 aaKnown RBP25.39■■□□□ 1.66
VPS28-208ENST00000527797 GYG1P46976 350 aa25.39■■□□□ 1.66
VPS28-208ENST00000527797 VPS37DQ86XT2 251 aa25.39■■□□□ 1.66
VPS28-208ENST00000527797 C2CD5Q86YS7 1000 aa25.39■■□□□ 1.66
VPS28-208ENST00000527797 SPATA5Q8NB90 893 aa25.39■■□□□ 1.66
VPS28-208ENST00000527797 FAM227BQ96M60 508 aa25.39■■□□□ 1.66
VPS28-208ENST00000527797 HMG20BQ9P0W2 317 aa25.39■■□□□ 1.66
VPS28-208ENST00000527797 H0YIN7 160 aa25.38■■□□□ 1.65
VPS28-208ENST00000527797 DDRGK1Q96HY6 314 aa25.38■■□□□ 1.65
VPS28-208ENST00000527797 A0A1B0GUL6 1792 aa25.38■■□□□ 1.65
VPS28-208ENST00000527797 GPSM2P81274 684 aa25.37■■□□□ 1.65
VPS28-208ENST00000527797 RASGRF1Q13972 1273 aa25.37■■□□□ 1.65
VPS28-208ENST00000527797 SP8Q8IXZ3 490 aa25.37■■□□□ 1.65
VPS28-208ENST00000527797 FAM84BQ96KN1 310 aaPredicted RBP25.37■■□□□ 1.65
VPS28-208ENST00000527797 A0A0D9SFI3 127 aa25.37■■□□□ 1.65
VPS28-208ENST00000527797 ATP2B4P23634 1241 aa25.37■■□□□ 1.65
VPS28-208ENST00000527797 FBXO33Q7Z6M2 555 aa25.37■■□□□ 1.65
VPS28-208ENST00000527797 NSFL1CQ9UNZ2 370 aaKnown RBP25.37■■□□□ 1.65
VPS28-208ENST00000527797 RNF113AO15541 343 aaKnown RBP25.36■■□□□ 1.65
VPS28-208ENST00000527797 CYP2E1P05181 493 aaPredicted RBP25.36■■□□□ 1.65
VPS28-208ENST00000527797 STYK1Q6J9G0 422 aa25.36■■□□□ 1.65
VPS28-208ENST00000527797 ZNF622Q969S3 477 aaKnown RBP eCLIP25.36■■□□□ 1.652e-11■■■■■ 40.7
VPS28-208ENST00000527797 ATP6V0A2Q9Y487 856 aa25.36■■□□□ 1.65
VPS28-208ENST00000527797 ZFYP08048 801 aaPredicted RBP25.35■■□□□ 1.65
VPS28-208ENST00000527797 HIBADHP31937 336 aaKnown RBP25.35■■□□□ 1.65
VPS28-208ENST00000527797 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.35■■□□□ 1.652e-7■■■■□ 23.7
VPS28-208ENST00000527797 PODXL2Q9NZ53 605 aa25.35■■□□□ 1.65
VPS28-208ENST00000527797 MCCP23508 829 aa25.34■■□□□ 1.65
VPS28-208ENST00000527797 KLRK1P26718 216 aa25.34■■□□□ 1.65
VPS28-208ENST00000527797 SLC51AQ86UW1 340 aa25.34■■□□□ 1.65
VPS28-208ENST00000527797 IPO9Q96P70 1041 aaKnown RBP25.34■■□□□ 1.65
VPS28-208ENST00000527797 LSG1Q9H089 658 aaKnown RBP25.34■■□□□ 1.65
VPS28-208ENST00000527797 HELLSQ9NRZ9 838 aa25.34■■□□□ 1.65
VPS28-208ENST00000527797 GGA1Q9UJY5 639 aa25.34■■□□□ 1.65
VPS28-208ENST00000527797 MCMDC2Q4G0Z9 681 aa25.34■■□□□ 1.65
VPS28-208ENST00000527797 ZSCAN25Q6NSZ9 544 aa25.34■■□□□ 1.65
VPS28-208ENST00000527797 TMX4Q9H1E5 349 aaPredicted RBP25.34■■□□□ 1.65
VPS28-208ENST00000527797 SEMA3EO15041 775 aa25.33■■□□□ 1.65
VPS28-208ENST00000527797 C15orf52Q6ZUT6 534 aaKnown RBP25.33■■□□□ 1.65
VPS28-208ENST00000527797 PIH1D3Q9NQM4 214 aaKnown RBP25.33■■□□□ 1.65
VPS28-208ENST00000527797 DENND2AQ9ULE3 1009 aa25.33■■□□□ 1.65
VPS28-208ENST00000527797 IRS2Q9Y4H2 1338 aa25.32■■□□□ 1.64
VPS28-208ENST00000527797 UFL1O94874 794 aa25.32■■□□□ 1.64
VPS28-208ENST00000527797 ZMYM1Q5SVZ6 1142 aa25.32■■□□□ 1.64
VPS28-208ENST00000527797 ZBTB7AO95365 584 aa25.31■■□□□ 1.64
VPS28-208ENST00000527797 CHGBP05060 677 aa25.31■■□□□ 1.64
VPS28-208ENST00000527797 R3HDM1Q15032 1099 aaKnown RBP25.31■■□□□ 1.64
VPS28-208ENST00000527797 CNKSR1Q969H4 720 aa25.31■■□□□ 1.64
VPS28-208ENST00000527797 MTFR1LQ9H019 292 aa25.31■■□□□ 1.64
VPS28-208ENST00000527797 IQSEC3Q9UPP2 1182 aaPredicted RBP25.31■■□□□ 1.64
VPS28-208ENST00000527797 MED23Q9ULK4 1368 aa25.31■■□□□ 1.64
VPS28-208ENST00000527797 FRAT2O75474 233 aaPredicted RBP25.3■■□□□ 1.64
VPS28-208ENST00000527797 CHRNA5P30532 468 aa25.3■■□□□ 1.64
VPS28-208ENST00000527797 TXNRD3Q86VQ6 643 aa25.3■■□□□ 1.64
VPS28-208ENST00000527797 C10orf71Q711Q0 1435 aa25.3■■□□□ 1.64
VPS28-208ENST00000527797 AKAP11Q9UKA4 1901 aa25.3■■□□□ 1.64
VPS28-208ENST00000527797 IDH1O75874 414 aaKnown RBP25.3■■□□□ 1.64
VPS28-208ENST00000527797 POLD1P28340 1107 aa25.3■■□□□ 1.64
VPS28-208ENST00000527797 KIF2CQ99661 725 aa25.3■■□□□ 1.64
VPS28-208ENST00000527797 CCDC171Q6TFL3 1326 aa25.29■■□□□ 1.64
VPS28-208ENST00000527797 COL11A2P13942 1736 aaPredicted RBP25.29■■□□□ 1.64
VPS28-208ENST00000527797 ZBTB22O15209 634 aa25.29■■□□□ 1.64
VPS28-208ENST00000527797 WASHC4Q2M389 1173 aa25.29■■□□□ 1.64
VPS28-208ENST00000527797 ZNF804AQ7Z570 1209 aa25.29■■□□□ 1.64
VPS28-208ENST00000527797 ZNF589Q86UQ0 364 aaPredicted RBP25.29■■□□□ 1.64
VPS28-208ENST00000527797 TBC1D16Q8TBP0 767 aa25.29■■□□□ 1.64
VPS28-208ENST00000527797 SEC62Q99442 399 aaKnown RBP25.29■■□□□ 1.64
VPS28-208ENST00000527797 PTH1RQ03431 593 aa25.28■■□□□ 1.64
VPS28-208ENST00000527797 MAP3K12Q12852 859 aa25.28■■□□□ 1.64
VPS28-208ENST00000527797 SLC9C2Q5TAH2 1124 aa25.28■■□□□ 1.64
VPS28-208ENST00000527797 MPNDQ8N594 471 aa25.28■■□□□ 1.64
VPS28-208ENST00000527797 POLLQ9UGP5 575 aa25.28■■□□□ 1.64
VPS28-208ENST00000527797 ATF5Q9Y2D1 282 aaPredicted RBP25.28■■□□□ 1.64
VPS28-208ENST00000527797 PDS5AQ29RF7 1337 aaKnown RBP25.28■■□□□ 1.64
VPS28-208ENST00000527797 C6orf229H3BNL8 230 aa25.27■■□□□ 1.64
VPS28-208ENST00000527797 HSPA4P34932 840 aa25.27■■□□□ 1.64
VPS28-208ENST00000527797 SLFNL1Q499Z3 407 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 209.4 ms