RNA–Protein interactions for RNA: ENST00000513989.5

NEDD9-214, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 4

Gene NEDD9, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-214ENST00000513989 MINPP1Q9UNW1 487 aa12.51□□□□□ -0.41
NEDD9-214ENST00000513989 EXOC6BQ9Y2D4 811 aa12.51□□□□□ -0.41
NEDD9-214ENST00000513989 FZD9O00144 591 aa12.5□□□□□ -0.41
NEDD9-214ENST00000513989 CHRNDQ07001 517 aa12.5□□□□□ -0.41
NEDD9-214ENST00000513989 LRRC24Q50LG9 513 aa12.5□□□□□ -0.41
NEDD9-214ENST00000513989 ANKRD45Q5TZF3 282 aa12.5□□□□□ -0.41
NEDD9-214ENST00000513989 B4GALNT3Q6L9W6 998 aa12.5□□□□□ -0.41
NEDD9-214ENST00000513989 CLASRPQ8N2M8 674 aaKnown RBP12.5□□□□□ -0.41
NEDD9-214ENST00000513989 MPNDQ8N594 471 aa12.5□□□□□ -0.41
NEDD9-214ENST00000513989 TAF1DQ9H5J8 278 aaPredicted RBP12.5□□□□□ -0.41
NEDD9-214ENST00000513989 NSFL1CQ9UNZ2 370 aaKnown RBP12.5□□□□□ -0.41
NEDD9-214ENST00000513989 LEMD3Q9Y2U8 911 aa12.5□□□□□ -0.41
NEDD9-214ENST00000513989 COL4A1P02462 1669 aa12.5□□□□□ -0.41
NEDD9-214ENST00000513989 LRRC37AA6NMS7 1700 aa12.5□□□□□ -0.41
NEDD9-214ENST00000513989 APBB1O00213 710 aa12.49□□□□□ -0.41
NEDD9-214ENST00000513989 PDE8BO95263 885 aa12.49□□□□□ -0.41
NEDD9-214ENST00000513989 ATP2B4P23634 1241 aa12.49□□□□□ -0.41
NEDD9-214ENST00000513989 IARSP41252 1262 aaKnown RBP12.49□□□□□ -0.41
NEDD9-214ENST00000513989 DPP8Q6V1X1 898 aaPredicted RBP12.49□□□□□ -0.41
NEDD9-214ENST00000513989 ATG9AQ7Z3C6 839 aa12.49□□□□□ -0.41
NEDD9-214ENST00000513989 SUPT20HQ8NEM7 779 aa12.49□□□□□ -0.41
NEDD9-214ENST00000513989 PSMD1Q99460 953 aa12.49□□□□□ -0.41
NEDD9-214ENST00000513989 PUS3Q9BZE2 481 aaKnown RBP12.49□□□□□ -0.41
NEDD9-214ENST00000513989 GGA1Q9UJY5 639 aa12.49□□□□□ -0.41
NEDD9-214ENST00000513989 XDHP47989 1333 aa12.48□□□□□ -0.41
NEDD9-214ENST00000513989 C6orf229H3BNL8 230 aa12.48□□□□□ -0.41
NEDD9-214ENST00000513989 ITGBL1O95965 494 aaPredicted RBP12.48□□□□□ -0.41
NEDD9-214ENST00000513989 IFIT1P09914 478 aaKnown RBP12.48□□□□□ -0.41
NEDD9-214ENST00000513989 TFCP2Q12800 502 aa12.48□□□□□ -0.41
NEDD9-214ENST00000513989 UBE4AQ14139 1066 aa12.48□□□□□ -0.41
NEDD9-214ENST00000513989 PUM3Q15397 648 aaKnown RBP12.48□□□□□ -0.41
NEDD9-214ENST00000513989 SMC5Q8IY18 1101 aa12.48□□□□□ -0.41
NEDD9-214ENST00000513989 RHPN1Q8TCX5 695 aa12.48□□□□□ -0.41
NEDD9-214ENST00000513989 EYA3Q99504 573 aa12.48□□□□□ -0.41
NEDD9-214ENST00000513989 GPR108Q9NPR9 543 aa12.48□□□□□ -0.41
NEDD9-214ENST00000513989 CREBZFQ9NS37 354 aa12.48□□□□□ -0.41
NEDD9-214ENST00000513989 PODXL2Q9NZ53 605 aa12.48□□□□□ -0.41
NEDD9-214ENST00000513989 DUOX1Q9NRD9 1551 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 IQCA1LA6NCM1 817 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 TAF5LO75529 589 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 SASH1O94885 1247 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 IFIT2P09913 472 aaKnown RBP12.47□□□□□ -0.41
NEDD9-214ENST00000513989 HSPA1AP0DMV8 641 aaKnown RBP12.47□□□□□ -0.41
NEDD9-214ENST00000513989 HSPA1BP0DMV9 641 aaKnown RBP12.47□□□□□ -0.41
NEDD9-214ENST00000513989 SLC5A1P13866 664 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 NUCB1Q02818 461 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 GORABQ5T7V8 394 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 LDHDQ86WU2 507 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 HELBQ8NG08 1087 aaPredicted RBP12.47□□□□□ -0.41
NEDD9-214ENST00000513989 LPIN2Q92539 896 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 NEUROD6Q96NK8 337 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 BCL11AQ9H165 835 aa12.47□□□□□ -0.41
NEDD9-214ENST00000513989 POLR2AP24928 1970 aaKnown RBP12.47□□□□□ -0.41
NEDD9-214ENST00000513989 ZNF804BA4D1E1 1349 aa12.46□□□□□ -0.41
NEDD9-214ENST00000513989 G3V3G9 751 aa12.46□□□□□ -0.41
NEDD9-214ENST00000513989 GPSM2P81274 684 aa12.46□□□□□ -0.41
NEDD9-214ENST00000513989 CAVIN4Q5BKX8 364 aa12.46□□□□□ -0.41
NEDD9-214ENST00000513989 DCAF8Q5TAQ9 597 aa12.46□□□□□ -0.41
NEDD9-214ENST00000513989 CHD1LQ86WJ1 897 aa12.46□□□□□ -0.41
NEDD9-214ENST00000513989 VPS37DQ86XT2 251 aa12.46□□□□□ -0.41
NEDD9-214ENST00000513989 GPATCH3Q96I76 525 aa12.46□□□□□ -0.41
NEDD9-214ENST00000513989 ZC3H12CQ9C0D7 883 aaKnown RBP12.46□□□□□ -0.41
NEDD9-214ENST00000513989 VPS33BQ9H267 617 aa12.46□□□□□ -0.41
NEDD9-214ENST00000513989 CNTNAP1P78357 1384 aa12.45□□□□□ -0.42
NEDD9-214ENST00000513989 THSD7BQ9C0I4 1608 aa12.45□□□□□ -0.42
NEDD9-214ENST00000513989 UFL1O94874 794 aa12.45□□□□□ -0.42
NEDD9-214ENST00000513989 ATP2B3Q16720 1220 aa12.45□□□□□ -0.42
NEDD9-214ENST00000513989 AACSQ86V21 672 aa12.45□□□□□ -0.42
NEDD9-214ENST00000513989 IL1RAPL2Q9NP60 686 aa12.45□□□□□ -0.42
NEDD9-214ENST00000513989 GNL3LQ9NVN8 582 aaKnown RBP12.45□□□□□ -0.42
NEDD9-214ENST00000513989 MKRN1Q9UHC7 482 aaKnown RBP12.45□□□□□ -0.42
NEDD9-214ENST00000513989 HACL1Q9UJ83 578 aa12.45□□□□□ -0.42
NEDD9-214ENST00000513989 EPHX2P34913 555 aa12.44□□□□□ -0.42
NEDD9-214ENST00000513989 TIMM10P62072 90 aa12.44□□□□□ -0.42
NEDD9-214ENST00000513989 WASHC4Q2M389 1173 aa12.44□□□□□ -0.42
NEDD9-214ENST00000513989 TNNI3KQ59H18 835 aa12.44□□□□□ -0.42
NEDD9-214ENST00000513989 CCDC158Q5M9N0 1113 aa12.44□□□□□ -0.42
NEDD9-214ENST00000513989 GPC2Q8N158 579 aa12.44□□□□□ -0.42
NEDD9-214ENST00000513989 VGLL2Q8N8G2 317 aa12.44□□□□□ -0.42
NEDD9-214ENST00000513989 TBC1D16Q8TBP0 767 aa12.44□□□□□ -0.42
NEDD9-214ENST00000513989 RTFDC1Q9BY42 306 aaPredicted RBP12.44□□□□□ -0.42
NEDD9-214ENST00000513989 FPGT-TNNI3KV9GXZ4 949 aa12.44□□□□□ -0.42
NEDD9-214ENST00000513989 SCN9AQ15858 1988 aa12.43□□□□□ -0.42
NEDD9-214ENST00000513989 A0A1B0GUL7 405 aa12.43□□□□□ -0.42
NEDD9-214ENST00000513989 SMARCA5O60264 1052 aaPredicted RBP12.43□□□□□ -0.42
NEDD9-214ENST00000513989 SCNN1DP51172 638 aa12.43□□□□□ -0.42
NEDD9-214ENST00000513989 EAPPQ56P03 285 aaPredicted RBP12.43□□□□□ -0.42
NEDD9-214ENST00000513989 CNKSR2Q8WXI2 1034 aa12.43□□□□□ -0.42
NEDD9-214ENST00000513989 LNPKQ9C0E8 428 aa12.43□□□□□ -0.42
NEDD9-214ENST00000513989 POLLQ9UGP5 575 aa12.43□□□□□ -0.42
NEDD9-214ENST00000513989 FRAT2O75474 233 aaPredicted RBP12.42□□□□□ -0.42
NEDD9-214ENST00000513989 FGFR2P21802 821 aa12.42□□□□□ -0.42
NEDD9-214ENST00000513989 HIBADHP31937 336 aaKnown RBP12.42□□□□□ -0.42
NEDD9-214ENST00000513989 MAP1SQ66K74 1059 aaPredicted RBP12.42□□□□□ -0.42
NEDD9-214ENST00000513989 C15orf52Q6ZUT6 534 aaKnown RBP12.42□□□□□ -0.42
NEDD9-214ENST00000513989 ZNF804AQ7Z570 1209 aa12.42□□□□□ -0.42
NEDD9-214ENST00000513989 EAF2Q96CJ1 260 aaPredicted RBP12.42□□□□□ -0.42
NEDD9-214ENST00000513989 XAGE2Q96GT9 111 aa12.42□□□□□ -0.42
NEDD9-214ENST00000513989 CCDC8Q9H0W5 538 aaPredicted RBP12.42□□□□□ -0.42
NEDD9-214ENST00000513989 RIMBP2O15034 1052 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms