RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 LARP6Q9BRS8 491 aaKnown RBP25.51■■□□□ 1.67
UBE2D3-216ENST00000503742 BRD1O95696 1058 aa25.51■■□□□ 1.67
UBE2D3-216ENST00000503742 CYP21A2P08686 494 aa25.51■■□□□ 1.67
UBE2D3-216ENST00000503742 SF3B3Q15393 1217 aaKnown RBP25.51■■□□□ 1.67
UBE2D3-216ENST00000503742 TBC1D9BQ66K14 1250 aa25.51■■□□□ 1.67
UBE2D3-216ENST00000503742 CCDC102BQ68D86 513 aa25.51■■□□□ 1.67
UBE2D3-216ENST00000503742 AEBP2Q6ZN18 517 aaPredicted RBP25.51■■□□□ 1.67
UBE2D3-216ENST00000503742 HELBQ8NG08 1087 aaPredicted RBP25.51■■□□□ 1.67
UBE2D3-216ENST00000503742 OSBP2Q969R2 916 aa25.51■■□□□ 1.67
UBE2D3-216ENST00000503742 SH2B1Q9NRF2 756 aaPredicted RBP25.51■■□□□ 1.67
UBE2D3-216ENST00000503742 CASZ1Q86V15 1759 aa25.5■■□□□ 1.67
UBE2D3-216ENST00000503742 COL24A1Q17RW2 1714 aa25.5■■□□□ 1.67
UBE2D3-216ENST00000503742 M0R2C6 588 aa25.5■■□□□ 1.67
UBE2D3-216ENST00000503742 GNPATO15228 680 aa25.5■■□□□ 1.67
UBE2D3-216ENST00000503742 LARGE1O95461 756 aa25.5■■□□□ 1.67
UBE2D3-216ENST00000503742 IGHMBP2P38935 993 aaKnown RBP25.5■■□□□ 1.67
UBE2D3-216ENST00000503742 PHKA1P46020 1223 aa25.49■■□□□ 1.67
UBE2D3-216ENST00000503742 SLC10A5Q5PT55 438 aa25.49■■□□□ 1.67
UBE2D3-216ENST00000503742 COL4A1P02462 1669 aa25.49■■□□□ 1.67
UBE2D3-216ENST00000503742 UQCRFS1P1P0C7P4 283 aa25.49■■□□□ 1.67
UBE2D3-216ENST00000503742 HSPD1P10809 573 aaKnown RBP25.49■■□□□ 1.67
UBE2D3-216ENST00000503742 RTCBQ9Y3I0 505 aaKnown RBP25.49■■□□□ 1.67
UBE2D3-216ENST00000503742 SLC5A1P13866 664 aa25.48■■□□□ 1.67
UBE2D3-216ENST00000503742 SRP68Q9UHB9 627 aaKnown RBP25.48■■□□□ 1.67
UBE2D3-216ENST00000503742 C4BP0C0L5 1744 aa25.48■■□□□ 1.67
UBE2D3-216ENST00000503742 GOLGA6L22H0YM25 854 aa25.47■■□□□ 1.67
UBE2D3-216ENST00000503742 C3orf67Q6ZVT6 689 aa25.47■■□□□ 1.67
UBE2D3-216ENST00000503742 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.47■■□□□ 1.67
UBE2D3-216ENST00000503742 ANKRD1Q15327 319 aa25.47■■□□□ 1.67
UBE2D3-216ENST00000503742 TTF1Q15361 905 aaPredicted RBP25.47■■□□□ 1.67
UBE2D3-216ENST00000503742 ME3Q16798 604 aa25.47■■□□□ 1.67
UBE2D3-216ENST00000503742 AMIGO3Q86WK7 504 aa25.47■■□□□ 1.67
UBE2D3-216ENST00000503742 APPBP2Q92624 585 aa25.47■■□□□ 1.67
UBE2D3-216ENST00000503742 NEK1Q96PY6 1258 aa25.47■■□□□ 1.67
UBE2D3-216ENST00000503742 CDC5LQ99459 802 aaKnown RBP25.47■■□□□ 1.67
UBE2D3-216ENST00000503742 BCL11BQ9C0K0 894 aaPredicted RBP25.46■■□□□ 1.67
UBE2D3-216ENST00000503742 TPCN1Q9ULQ1 816 aa25.46■■□□□ 1.67
UBE2D3-216ENST00000503742 ZPR1O75312 459 aa25.45■■□□□ 1.67
UBE2D3-216ENST00000503742 ST3GAL1Q11201 340 aa25.45■■□□□ 1.67
UBE2D3-216ENST00000503742 SKOR2Q2VWA4 1001 aaPredicted RBP25.45■■□□□ 1.67
UBE2D3-216ENST00000503742 BICDL1Q6ZP65 573 aa25.45■■□□□ 1.67
UBE2D3-216ENST00000503742 QTRT2Q9H974 415 aaKnown RBP25.45■■□□□ 1.67
UBE2D3-216ENST00000503742 TOB2Q14106 344 aaPredicted RBP25.45■■□□□ 1.66
UBE2D3-216ENST00000503742 ARHGEF1Q92888 912 aaKnown RBP25.45■■□□□ 1.66
UBE2D3-216ENST00000503742 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.45■■□□□ 1.669e-7■■□□□ 13.5
UBE2D3-216ENST00000503742 NYXQ9GZU5 481 aa25.45■■□□□ 1.66
UBE2D3-216ENST00000503742 MYO5AQ9Y4I1 1855 aaKnown RBP25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 C4AP0C0L4 1744 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 SNAP23O00161 211 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 WASHC4Q2M389 1173 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 PIH1D3Q9NQM4 214 aaKnown RBP25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 LAMA4Q16363 1823 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 FOXP2O15409 715 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 ADD2P35612 726 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 CHRNDQ07001 517 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 ZSCAN25Q6NSZ9 544 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 STOX1Q6ZVD7 989 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 SETDB2Q96T68 719 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 A0A1B0GUL6 1792 aa25.44■■□□□ 1.66
UBE2D3-216ENST00000503742 CCDC83Q8IWF9 413 aa25.43■■□□□ 1.66
UBE2D3-216ENST00000503742 TCEANC2Q96MN5 208 aa25.43■■□□□ 1.66
UBE2D3-216ENST00000503742 PUS7LQ9H0K6 701 aaKnown RBP25.43■■□□□ 1.66
UBE2D3-216ENST00000503742 MCTP1Q6DN14 999 aa25.42■■□□□ 1.66
UBE2D3-216ENST00000503742 SMC3Q9UQE7 1217 aa25.42■■□□□ 1.66
UBE2D3-216ENST00000503742 TAF1P21675 1872 aa25.41■■□□□ 1.66
UBE2D3-216ENST00000503742 DOCK2Q92608 1830 aa25.41■■□□□ 1.66
UBE2D3-216ENST00000503742 UBE3CQ15386 1083 aa25.41■■□□□ 1.66
UBE2D3-216ENST00000503742 ANKRD18AQ8IVF6 992 aa25.41■■□□□ 1.66
UBE2D3-216ENST00000503742 WDR33Q9C0J8 1336 aaKnown RBP25.41■■□□□ 1.66
UBE2D3-216ENST00000503742 HMGB1P09429 215 aaKnown RBP25.4■■□□□ 1.66
UBE2D3-216ENST00000503742 GTF2E1P29083 439 aaPredicted RBP25.4■■□□□ 1.66
UBE2D3-216ENST00000503742 SPATA5Q8NB90 893 aa25.4■■□□□ 1.66
UBE2D3-216ENST00000503742 LRRC4BQ9NT99 713 aa25.4■■□□□ 1.66
UBE2D3-216ENST00000503742 BSDC1Q9NW68 430 aaPredicted RBP25.4■■□□□ 1.66
UBE2D3-216ENST00000503742 RASGRF1Q13972 1273 aa25.4■■□□□ 1.66
UBE2D3-216ENST00000503742 LMBRD1Q9NUN5 540 aa25.4■■□□□ 1.66
UBE2D3-216ENST00000503742 A0A0G2JLW4 131 aa25.39■■□□□ 1.66
UBE2D3-216ENST00000503742 SLC9C2Q5TAH2 1124 aa25.39■■□□□ 1.66
UBE2D3-216ENST00000503742 NBPF5PQ86XG9 351 aaPredicted RBP25.39■■□□□ 1.66
UBE2D3-216ENST00000503742 GPAA1O43292 621 aa25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 FOXD4L5Q5VV16 416 aaPredicted RBP25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 FAM196AQ6ZSG2 479 aa25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 NECAB1Q8N987 351 aa25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 FOXD4L4Q8WXT5 416 aaPredicted RBP25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 CTNNA3Q9UI47 895 aa25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 BRWD3Q6RI45 1802 aa25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 TCRBV5S4A2TA0A5A2 114 aa25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 TRAPPC3LQ5T215 181 aa25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 TPTE2Q6XPS3 522 aa25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 GZF1Q9H116 711 aaPredicted RBP25.38■■□□□ 1.65
UBE2D3-216ENST00000503742 E7EWF7 191 aa25.37■■□□□ 1.65
UBE2D3-216ENST00000503742 IDH1O75874 414 aaKnown RBP25.37■■□□□ 1.65
UBE2D3-216ENST00000503742 PDE6AP16499 860 aa25.37■■□□□ 1.65
UBE2D3-216ENST00000503742 BCAMP50895 628 aa25.37■■□□□ 1.65
UBE2D3-216ENST00000503742 TTLL5Q6EMB2 1281 aa25.37■■□□□ 1.65
UBE2D3-216ENST00000503742 DHX32Q7L7V1 743 aaKnown RBP25.37■■□□□ 1.65
UBE2D3-216ENST00000503742 NLRP3Q96P20 1036 aa25.37■■□□□ 1.65
UBE2D3-216ENST00000503742 SYT1P21579 422 aa25.36■■□□□ 1.65
UBE2D3-216ENST00000503742 GJB2P29033 226 aa25.36■■□□□ 1.65
UBE2D3-216ENST00000503742 EXOSC10Q01780 885 aaKnown RBP25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms