RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 NBPF14Q5TI25 921 aa19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 NBPF10Q6P3W6 841 aaKnown RBP19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 STOX1Q6ZVD7 989 aa19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 NBPF15Q8N660 670 aa19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 PIGBQ92521 554 aa19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 SPATA32Q96LK8 384 aa19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 ASAP1Q9ULH1 1129 aa19.02■□□□□ 0.64
MSH5-SAPCD1-208ENST00000498473 RESTQ13127 1097 aa19.01■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 CAMK4Q16566 473 aa19.01■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 ATG9AQ7Z3C6 839 aa19.01■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 KBTBD3Q8NAB2 608 aa19.01■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 C17orf53Q8N3J3 647 aaPredicted RBP19.01■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 CDCA7Q9BWT1 371 aaPredicted RBP19.01■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 DACT1Q9NYF0 836 aa19.01■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 SH3TC1Q8TE82 1336 aa19.01■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 TJP1Q07157 1748 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 NUP188Q5SRE5 1749 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 ONECUT3O60422 494 aaPredicted RBP19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 TYRO3Q06418 890 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 RBM43Q6ZSC3 357 aaKnown RBP19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 KRT27Q7Z3Y8 459 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 FAM200AQ8TCP9 573 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 BRF1Q92994 677 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 PGBD1Q96JS3 809 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 SPTLC3Q9NUV7 552 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 PLCB2Q00722 1185 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 SLFNL1Q499Z3 407 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 PALLDQ8WX93 1383 aa19■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 DYNC1I1O14576 645 aa18.99■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 SMARCC2Q8TAQ2 1214 aa18.99■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 KCNF1Q9H3M0 494 aa18.99■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 TMOD3Q9NYL9 352 aa18.99■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 SCRN1Q12765 414 aa18.98■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 LRRC2Q9BYS8 371 aa18.98■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 MYH15Q9Y2K3 1946 aa18.98■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 TTLL7Q6ZT98 887 aa18.98■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 CKAP2LQ8IYA6 745 aa18.98■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 TNMDQ9H2S6 317 aa18.98■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 CLSTN2Q9H4D0 955 aa18.98■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 DDX19AQ9NUU7 478 aaKnown RBP18.98■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 TRIM37O94972 964 aa18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 NKX1-1Q15270 411 aaPredicted RBP18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 DDX11Q96FC9 970 aa18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 GPR108Q9NPR9 543 aa18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 PFKFB2O60825 505 aa18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 HSP90B1P14625 803 aaKnown RBP18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 TIMM10P62072 90 aa18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 HELLSQ9NRZ9 838 aa18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 PAG1Q9NWQ8 432 aa18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 FAM13BQ9NYF5 915 aa18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 UBR2Q8IWV8 1755 aa18.97■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 GOLGA6L4A6NEF3 574 aa18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 GOLIM4O00461 696 aa18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 NR1I2O75469 434 aa18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 LUZP1Q86V48 1076 aa18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 CTDNEP1O95476 244 aa18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 EXOSC10Q01780 885 aaKnown RBP18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 ZMYM1Q5SVZ6 1142 aa18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 DHX32Q7L7V1 743 aaKnown RBP18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 KIAA1524Q8TCG1 905 aa18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 NEUROD6Q96NK8 337 aa18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 DSCC1Q9BVC3 393 aa18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 CBX8Q9HC52 389 aa18.96■□□□□ 0.63
MSH5-SAPCD1-208ENST00000498473 A0A0G2JLW4 131 aa18.95■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 ADD1P35611 737 aaKnown RBP18.95■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 ANO6Q4KMQ2 910 aa18.95■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 MYRIPQ8NFW9 859 aa18.95■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 LLPHQ9BRT6 129 aaKnown RBP18.95■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 AGXT2Q9BYV1 514 aa18.95■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 CWC25Q9NXE8 425 aaPredicted RBP18.95■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 PYCARDQ9ULZ3 195 aa18.95■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 DNTTIP2Q5QJE6 756 aaKnown RBP18.94■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 SPC24Q8NBT2 197 aa18.94■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 NSUN7Q8NE18 718 aaKnown RBP18.94■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 ZSCAN16Q9H4T2 348 aaPredicted RBP18.94■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 HMGB1P09429 215 aaKnown RBP18.94■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 IL15P40933 162 aaPredicted RBP18.94■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 LRRC24Q50LG9 513 aa18.94■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 MAP7D2Q96T17 732 aa18.94■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 KCPQ6ZWJ8 1503 aa18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 H3BQV1 296 aa18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 TPM3P06753 285 aa18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 IFFO2Q5TF58 517 aa18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 TICAM2Q86XR7 235 aa18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 SBF2Q86WG5 1849 aa18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 A1BGP04217 495 aa18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 APOBRQ0VD83 1088 aa18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 ZNF594Q96JF6 807 aaPredicted RBP18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 PRIMPOLQ96LW4 560 aa18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 ATG3Q9NT62 314 aa18.93■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 ERVV-2B6SEH9 535 aa18.92■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 EYA2O00167 538 aa18.92■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 HSPD1P10809 573 aaKnown RBP18.92■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 BICD2Q8TD16 824 aa18.92■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 SPEF2Q9C093 1822 aa18.92■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 NAA16Q6N069 864 aaPredicted RBP18.92■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 PAPPAQ13219 1627 aa18.92■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 MAST3O60307 1309 aa18.91■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 E7EWF7 191 aa18.91■□□□□ 0.62
MSH5-SAPCD1-208ENST00000498473 SMIM5Q71RC9 77 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms