RNA–Protein interactions for RNA: ENST00000465457.1

HDAC6-215, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-215ENST00000465457 SCARF1Q14162 830 aa17.43■□□□□ 0.38
HDAC6-215ENST00000465457 FBXO46Q6PJ61 603 aaPredicted RBP17.43■□□□□ 0.38
HDAC6-215ENST00000465457 COPS6Q7L5N1 327 aa17.43■□□□□ 0.38
HDAC6-215ENST00000465457 SPEF2Q9C093 1822 aa17.42■□□□□ 0.38
HDAC6-215ENST00000465457 POTEFA5A3E0 1075 aa17.42■□□□□ 0.38
HDAC6-215ENST00000465457 GPR25O00155 361 aa17.42■□□□□ 0.38
HDAC6-215ENST00000465457 VIL1P09327 827 aaKnown RBP17.42■□□□□ 0.38
HDAC6-215ENST00000465457 CENPQQ7L2Z9 268 aaPredicted RBP17.42■□□□□ 0.38
HDAC6-215ENST00000465457 FTSJ3Q8IY81 847 aaKnown RBP17.42■□□□□ 0.38
HDAC6-215ENST00000465457 TBC1D16Q8TBP0 767 aa17.42■□□□□ 0.38
HDAC6-215ENST00000465457 SSH1Q8WYL5 1049 aa17.42■□□□□ 0.38
HDAC6-215ENST00000465457 ARHGAP45Q92619 1136 aa17.42■□□□□ 0.38
HDAC6-215ENST00000465457 CEP290O15078 2479 aa17.41■□□□□ 0.38
HDAC6-215ENST00000465457 ZNF609O15014 1411 aa17.41■□□□□ 0.38
HDAC6-215ENST00000465457 ZNF280AP59817 542 aaPredicted RBP17.41■□□□□ 0.38
HDAC6-215ENST00000465457 TCIRG1Q13488 830 aa17.41■□□□□ 0.38
HDAC6-215ENST00000465457 TWISTNBQ3B726 338 aaPredicted RBP17.41■□□□□ 0.38
HDAC6-215ENST00000465457 RTL5Q5HYW3 569 aaPredicted RBP17.41■□□□□ 0.38
HDAC6-215ENST00000465457 TMC4Q7Z404 712 aa17.41■□□□□ 0.38
HDAC6-215ENST00000465457 GCC1Q96CN9 775 aa17.41■□□□□ 0.38
HDAC6-215ENST00000465457 TSPYL4Q9UJ04 414 aa17.41■□□□□ 0.38
HDAC6-215ENST00000465457 TRIOBPQ9H2D6 2365 aa17.41■□□□□ 0.38
HDAC6-215ENST00000465457 LAMB1P07942 1786 aa17.4■□□□□ 0.38
HDAC6-215ENST00000465457 VAMP4O75379 141 aa17.4■□□□□ 0.38
HDAC6-215ENST00000465457 FXR1P51114 621 aaKnown RBP eCLIP17.4■□□□□ 0.38
HDAC6-215ENST00000465457 KRT24Q2M2I5 525 aa17.4■□□□□ 0.38
HDAC6-215ENST00000465457 ATF7IPQ6VMQ6 1270 aa17.4■□□□□ 0.38
HDAC6-215ENST00000465457 REM2Q8IYK8 340 aaPredicted RBP17.4■□□□□ 0.38
HDAC6-215ENST00000465457 DZIP1LQ8IYY4 767 aaKnown RBP17.4■□□□□ 0.38
HDAC6-215ENST00000465457 FAM89AQ96GI7 184 aa17.4■□□□□ 0.38
HDAC6-215ENST00000465457 CHMP4BQ9H444 224 aaKnown RBP17.4■□□□□ 0.38
HDAC6-215ENST00000465457 MVPQ14764 893 aaKnown RBP17.39■□□□□ 0.37
HDAC6-215ENST00000465457 HSP90AB3PQ58FF7 597 aa17.39■□□□□ 0.37
HDAC6-215ENST00000465457 CLUAP1Q96AJ1 413 aa17.39■□□□□ 0.37
HDAC6-215ENST00000465457 FKBP1BP68106 108 aa17.38■□□□□ 0.37
HDAC6-215ENST00000465457 CHMP4AQ9BY43 222 aa17.38■□□□□ 0.37
HDAC6-215ENST00000465457 ATP5J2-PTCD1G3V325 749 aa17.37■□□□□ 0.37
HDAC6-215ENST00000465457 UFL1O94874 794 aa17.37■□□□□ 0.37
HDAC6-215ENST00000465457 TM4SF4P48230 202 aa17.37■□□□□ 0.37
HDAC6-215ENST00000465457 SF3B3Q15393 1217 aaKnown RBP17.37■□□□□ 0.37
HDAC6-215ENST00000465457 RSBN1LQ6PCB5 846 aaPredicted RBP17.37■□□□□ 0.37
HDAC6-215ENST00000465457 PANK1Q8TE04 598 aa17.37■□□□□ 0.37
HDAC6-215ENST00000465457 GMLQ99445 158 aa17.37■□□□□ 0.37
HDAC6-215ENST00000465457 EYA3Q99504 573 aa17.37■□□□□ 0.37
HDAC6-215ENST00000465457 MYOZ2Q9NPC6 264 aa17.37■□□□□ 0.37
HDAC6-215ENST00000465457 DDX19BQ9UMR2 479 aa17.37■□□□□ 0.37
HDAC6-215ENST00000465457 FKTNO75072 461 aa17.36■□□□□ 0.37
HDAC6-215ENST00000465457 NBPF9Q3BBW0 867 aa17.36■□□□□ 0.37
HDAC6-215ENST00000465457 SEC31BQ9NQW1 1179 aa17.36■□□□□ 0.37
HDAC6-215ENST00000465457 TSHZ2Q9NRE2 1034 aa17.36■□□□□ 0.37
HDAC6-215ENST00000465457 NOB1Q9ULX3 412 aaKnown RBP17.36■□□□□ 0.37
HDAC6-215ENST00000465457 FZD1Q9UP38 647 aa17.36■□□□□ 0.37
HDAC6-215ENST00000465457 COG6Q9Y2V7 657 aa17.36■□□□□ 0.37
HDAC6-215ENST00000465457 WTIPA6NIX2 430 aaPredicted RBP17.35■□□□□ 0.37
HDAC6-215ENST00000465457 TRIM27P14373 513 aa17.35■□□□□ 0.37
HDAC6-215ENST00000465457 TTLL12Q14166 644 aaPredicted RBP17.35■□□□□ 0.37
HDAC6-215ENST00000465457 NOM1Q5C9Z4 860 aaKnown RBP17.35■□□□□ 0.37
HDAC6-215ENST00000465457 MRPL50Q8N5N7 158 aaKnown RBP17.35■□□□□ 0.37
HDAC6-215ENST00000465457 MXD3Q9BW11 206 aa17.35■□□□□ 0.37
HDAC6-215ENST00000465457 API5Q9BZZ5 524 aaKnown RBP17.35■□□□□ 0.37
HDAC6-215ENST00000465457 CHPF2Q9P2E5 772 aa17.35■□□□□ 0.37
HDAC6-215ENST00000465457 PITPNM2Q9BZ72 1349 aa17.35■□□□□ 0.37
HDAC6-215ENST00000465457 PRKG1Q13976 671 aa17.34■□□□□ 0.37
HDAC6-215ENST00000465457 AGBL3Q8NEM8 1001 aa17.34■□□□□ 0.37
HDAC6-215ENST00000465457 ISCA1Q9BUE6 129 aa17.34■□□□□ 0.37
HDAC6-215ENST00000465457 ZC3H12CQ9C0D7 883 aaKnown RBP17.34■□□□□ 0.37
HDAC6-215ENST00000465457 USP17L8P0C7I0 530 aa17.33■□□□□ 0.36
HDAC6-215ENST00000465457 RPS8P62241 208 aaKnown RBP17.33■□□□□ 0.36
HDAC6-215ENST00000465457 CAP1Q01518 475 aa17.33■□□□□ 0.36
HDAC6-215ENST00000465457 PTPN12Q05209 780 aaKnown RBP17.33■□□□□ 0.36
HDAC6-215ENST00000465457 TSPYL6Q8N831 410 aa17.33■□□□□ 0.36
HDAC6-215ENST00000465457 C8orf58Q8NAV2 365 aa17.33■□□□□ 0.36
HDAC6-215ENST00000465457 PODXL2Q9NZ53 605 aa17.33■□□□□ 0.36
HDAC6-215ENST00000465457 TRIM17Q9Y577 477 aa17.33■□□□□ 0.36
HDAC6-215ENST00000465457 RLBP1P12271 317 aa17.32■□□□□ 0.36
HDAC6-215ENST00000465457 OTOP1Q7RTM1 612 aa17.32■□□□□ 0.36
HDAC6-215ENST00000465457 CFHR5Q9BXR6 569 aa17.32■□□□□ 0.36
HDAC6-215ENST00000465457 ZSWIM8A7E2V4 1837 aa17.31■□□□□ 0.36
HDAC6-215ENST00000465457 PTPRCP08575 1304 aa17.31■□□□□ 0.36
HDAC6-215ENST00000465457 IRS4O14654 1257 aaPredicted RBP17.31■□□□□ 0.36
HDAC6-215ENST00000465457 SASH1O94885 1247 aa17.31■□□□□ 0.36
HDAC6-215ENST00000465457 EN2P19622 333 aaPredicted RBP17.31■□□□□ 0.36
HDAC6-215ENST00000465457 ANKIB1Q9P2G1 1089 aa17.31■□□□□ 0.36
HDAC6-215ENST00000465457 GGA1Q9UJY5 639 aa17.31■□□□□ 0.36
HDAC6-215ENST00000465457 RANBP2P49792 3224 aaKnown RBP17.31■□□□□ 0.36
HDAC6-215ENST00000465457 OTOFQ9HC10 1997 aa17.31■□□□□ 0.36
HDAC6-215ENST00000465457 G3V3G9 751 aa17.3■□□□□ 0.36
HDAC6-215ENST00000465457 HOXB7P09629 217 aa17.3■□□□□ 0.36
HDAC6-215ENST00000465457 SREBF2Q12772 1141 aa17.3■□□□□ 0.36
HDAC6-215ENST00000465457 DCAF8Q5TAQ9 597 aa17.3■□□□□ 0.36
HDAC6-215ENST00000465457 CCDC85AQ96PX6 553 aaPredicted RBP17.3■□□□□ 0.36
HDAC6-215ENST00000465457 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.3■□□□□ 0.36
HDAC6-215ENST00000465457 COLQQ9Y215 455 aaPredicted RBP17.3■□□□□ 0.36
HDAC6-215ENST00000465457 SSC5DA1L4H1 1573 aa17.3■□□□□ 0.36
HDAC6-215ENST00000465457 ECM29Q5VYK3 1845 aa17.29■□□□□ 0.36
HDAC6-215ENST00000465457 ITPRIPQ8IWB1 547 aa17.29■□□□□ 0.36
HDAC6-215ENST00000465457 PLBD2Q8NHP8 589 aa17.29■□□□□ 0.36
HDAC6-215ENST00000465457 MYH3P11055 1940 aa17.29■□□□□ 0.36
HDAC6-215ENST00000465457 IGF2BP3O00425 579 aaKnown RBP eCLIP17.28■□□□□ 0.36
HDAC6-215ENST00000465457 WNT10BO00744 389 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms