RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 MAP4K4O95819 1239 aaPredicted RBP10.12□□□□□ -0.79
HPS4-206ENST00000439453 PROSER3Q2NL68 480 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 ZSCAN25Q6NSZ9 544 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 KIF18AQ8NI77 898 aa10.12□□□□□ -0.79
HPS4-206ENST00000439453 DDX60Q8IY21 1712 aaKnown RBP10.12□□□□□ -0.79
HPS4-206ENST00000439453 MSL1Q68DK7 614 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 CACNA1SQ13698 1873 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 IL6STP40189 918 aaPredicted RBP10.11□□□□□ -0.79
HPS4-206ENST00000439453 ZNF75DP51815 510 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 CAMK4Q16566 473 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 NUTM1Q86Y26 1132 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 FLAD1Q8NFF5 587 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 TEX13AQ9BXU3 409 aaPredicted RBP10.11□□□□□ -0.79
HPS4-206ENST00000439453 CBX8Q9HC52 389 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 IL1RAPL2Q9NP60 686 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 VPS37CA5D8V6 355 aaPredicted RBP10.11□□□□□ -0.79
HPS4-206ENST00000439453 DTNBO60941 627 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 CPA1P15085 419 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 TRIM5Q9C035 493 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 HYPKQ9NX55 129 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 CHMP3Q9Y3E7 222 aa10.11□□□□□ -0.79
HPS4-206ENST00000439453 LIG1P18858 919 aa10.1□□□□□ -0.79
HPS4-206ENST00000439453 CASTP20810 708 aaKnown RBP10.1□□□□□ -0.79
HPS4-206ENST00000439453 TPD52L1Q16890 204 aaPredicted RBP10.1□□□□□ -0.79
HPS4-206ENST00000439453 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.1□□□□□ -0.79
HPS4-206ENST00000439453 PLA2G4DQ86XP0 818 aa10.1□□□□□ -0.79
HPS4-206ENST00000439453 CAMTA2O94983 1202 aa10.1□□□□□ -0.79
HPS4-206ENST00000439453 STARD3NLO95772 234 aa10.1□□□□□ -0.79
HPS4-206ENST00000439453 ANO6Q4KMQ2 910 aa10.1□□□□□ -0.79
HPS4-206ENST00000439453 TRAPPC3LQ5T215 181 aa10.1□□□□□ -0.79
HPS4-206ENST00000439453 TTC6Q86TZ1 520 aa10.1□□□□□ -0.79
HPS4-206ENST00000439453 SPON1Q9HCB6 807 aa10.1□□□□□ -0.79
HPS4-206ENST00000439453 C10orf71Q711Q0 1435 aa10.1□□□□□ -0.79
HPS4-206ENST00000439453 TERF2Q15554 542 aa10.1□□□□□ -0.79
HPS4-206ENST00000439453 LRRFIP2Q9Y608 721 aaKnown RBP10.1□□□□□ -0.79
HPS4-206ENST00000439453 ARFGEF1Q9Y6D6 1849 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 CKAP2LQ8IYA6 745 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 KRT222Q8N1A0 295 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 ZSCAN31Q96LW9 406 aaPredicted RBP10.09□□□□□ -0.79
HPS4-206ENST00000439453 NARFQ9UHQ1 456 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 KRT85P78386 507 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 DDR1Q08345 913 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 TNMDQ9H2S6 317 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 HOXB7P09629 217 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 HMGB2P26583 209 aaKnown RBP10.09□□□□□ -0.79
HPS4-206ENST00000439453 TM4SF1P30408 202 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 USPL1Q5W0Q7 1092 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 CEP135Q66GS9 1140 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 ZNF397Q8NF99 534 aaPredicted RBP10.09□□□□□ -0.79
HPS4-206ENST00000439453 PI4K2BQ8TCG2 481 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 CACTINQ8WUQ7 758 aaKnown RBP10.09□□□□□ -0.79
HPS4-206ENST00000439453 STK31Q9BXU1 1019 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 SH2B1Q9NRF2 756 aaPredicted RBP10.09□□□□□ -0.79
HPS4-206ENST00000439453 PDRG1Q9NUG6 133 aa10.09□□□□□ -0.79
HPS4-206ENST00000439453 TDRD7Q8NHU6 1098 aaKnown RBP10.08□□□□□ -0.8
HPS4-206ENST00000439453 ZNF592Q92610 1267 aa10.08□□□□□ -0.8
HPS4-206ENST00000439453 ELP1O95163 1332 aa10.08□□□□□ -0.8
HPS4-206ENST00000439453 CCDC66A2RUB6 948 aa10.08□□□□□ -0.8
HPS4-206ENST00000439453 VPS53Q5VIR6 699 aa10.08□□□□□ -0.8
HPS4-206ENST00000439453 ZBTB22O15209 634 aa10.08□□□□□ -0.8
HPS4-206ENST00000439453 ST3GAL1Q11201 340 aa10.08□□□□□ -0.8
HPS4-206ENST00000439453 FLIIQ13045 1269 aa10.08□□□□□ -0.8
HPS4-206ENST00000439453 CWC27Q6UX04 472 aaKnown RBP10.08□□□□□ -0.8
HPS4-206ENST00000439453 CNTROBQ8N137 903 aa10.08□□□□□ -0.8
HPS4-206ENST00000439453 DACT1Q9NYF0 836 aa10.08□□□□□ -0.8
HPS4-206ENST00000439453 CLIP2Q9UDT6 1046 aa10.08□□□□□ -0.8
HPS4-206ENST00000439453 ANXA1P04083 346 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 KMT5BQ4FZB7 885 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 JAKMIP1Q96N16 626 aaKnown RBP10.07□□□□□ -0.8
HPS4-206ENST00000439453 POLRMTO00411 1230 aaKnown RBP10.07□□□□□ -0.8
HPS4-206ENST00000439453 RAB11FIP3O75154 756 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 CCDC144BQ3MJ40 725 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 TTLL7Q6ZT98 887 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 CCDC144CPQ8IYA2 1237 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 CARMIL3Q8ND23 1372 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 RFC4P35249 363 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 LARP1BQ659C4 914 aaKnown RBP10.07□□□□□ -0.8
HPS4-206ENST00000439453 SSH3Q8TE77 659 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 PXDNLA1KZ92 1463 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 CCDC171Q6TFL3 1326 aa10.07□□□□□ -0.8
HPS4-206ENST00000439453 KCNJ4P48050 445 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 ME3Q16798 604 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 ADCK5Q3MIX3 580 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 FAM173BQ6P4H8 233 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 RBM43Q6ZSC3 357 aaKnown RBP10.06□□□□□ -0.8
HPS4-206ENST00000439453 FERMT3Q86UX7 667 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 NECAB1Q8N987 351 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 CLSTN2Q9H4D0 955 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 DDX19AQ9NUU7 478 aaKnown RBP10.06□□□□□ -0.8
HPS4-206ENST00000439453 FAM53CQ9NYF3 392 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 ZNF215Q9UL58 517 aaPredicted RBP10.06□□□□□ -0.8
HPS4-206ENST00000439453 TBC1D2BQ9UPU7 963 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 CYP46A1Q9Y6A2 500 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 GOLGA6L4A6NEF3 574 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 SURF6O75683 361 aaKnown RBP10.06□□□□□ -0.8
HPS4-206ENST00000439453 CDC25BP30305 580 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 HLFQ16534 295 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 TBC1D9BQ66K14 1250 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 CDC37L1Q7L3B6 337 aa10.06□□□□□ -0.8
HPS4-206ENST00000439453 ZSWIM6Q9HCJ5 1215 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms