RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 UBE3BQ7Z3V4 1068 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 MRFAP1L1Q96HT8 127 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 DNAJC2Q99543 621 aaKnown RBP11.48□□□□□ -0.57
CD44-206ENST00000415148 SPEF2Q9C093 1822 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 GOLGA6L19H0YKK7 550 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 IQCB1Q15051 598 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 STX1AQ16623 288 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 SEC62Q99442 399 aaKnown RBP11.48□□□□□ -0.57
CD44-206ENST00000415148 CLIP2Q9UDT6 1046 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 CTNNA3Q9UI47 895 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 LAMA4Q16363 1823 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 LAMB4A4D0S4 1761 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 FOXO4P98177 505 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 ZMYM1Q5SVZ6 1142 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 CCAR1Q8IX12 1150 aaKnown RBP11.47□□□□□ -0.57
CD44-206ENST00000415148 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.47□□□□□ -0.57
CD44-206ENST00000415148 ZNF592Q92610 1267 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 GOLPH3LQ9H4A5 285 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 ATG3Q9NT62 314 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 PAG1Q9NWQ8 432 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 NLRP2Q9NX02 1062 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 A0A0G2JLW4 131 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 SMTNL1A8MU46 457 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 IL15P40933 162 aaPredicted RBP11.47□□□□□ -0.57
CD44-206ENST00000415148 STOX1Q6ZVD7 989 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 RGS22Q8NE09 1264 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 C1orf167Q5SNV9 1468 aa11.47□□□□□ -0.57
CD44-206ENST00000415148 PKD1L3Q7Z443 1732 aa11.46□□□□□ -0.57
CD44-206ENST00000415148 SALL1Q9NSC2 1324 aa11.46□□□□□ -0.57
CD44-206ENST00000415148 CTDNEP1O95476 244 aa11.46□□□□□ -0.57
CD44-206ENST00000415148 EVCP57679 992 aa11.46□□□□□ -0.57
CD44-206ENST00000415148 LMBR1LQ6UX01 489 aa11.46□□□□□ -0.57
CD44-206ENST00000415148 CCDC73Q6ZRK6 1079 aa11.46□□□□□ -0.57
CD44-206ENST00000415148 DDX46Q7L014 1031 aaKnown RBP11.46□□□□□ -0.57
CD44-206ENST00000415148 ATG9AQ7Z3C6 839 aa11.46□□□□□ -0.57
CD44-206ENST00000415148 FBXW7Q969H0 707 aa11.46□□□□□ -0.57
CD44-206ENST00000415148 COL18A1P39060 1754 aa11.46□□□□□ -0.57
CD44-206ENST00000415148 PTPDC1A2A3K4 754 aa11.46□□□□□ -0.58
CD44-206ENST00000415148 RBM6P78332 1123 aaKnown RBP11.46□□□□□ -0.58
CD44-206ENST00000415148 FAM160A1Q05DH4 1040 aa11.46□□□□□ -0.58
CD44-206ENST00000415148 SNW1Q13573 536 aaKnown RBP11.46□□□□□ -0.58
CD44-206ENST00000415148 TPD52L1Q16890 204 aaPredicted RBP11.46□□□□□ -0.58
CD44-206ENST00000415148 LRRFIP1Q32MZ4 808 aaKnown RBP11.46□□□□□ -0.58
CD44-206ENST00000415148 ENGASEQ8NFI3 743 aa11.46□□□□□ -0.58
CD44-206ENST00000415148 GTPBP4Q9BZE4 634 aaKnown RBP11.46□□□□□ -0.58
CD44-206ENST00000415148 ANO10Q9NW15 660 aa11.46□□□□□ -0.58
CD44-206ENST00000415148 MEGF6O75095 1541 aa11.45□□□□□ -0.58
CD44-206ENST00000415148 E7EWF7 191 aa11.45□□□□□ -0.58
CD44-206ENST00000415148 RNF113AO15541 343 aaKnown RBP11.45□□□□□ -0.58
CD44-206ENST00000415148 CIAO1O76071 339 aa11.45□□□□□ -0.58
CD44-206ENST00000415148 ZC3H6P61129 1189 aaKnown RBP11.45□□□□□ -0.58
CD44-206ENST00000415148 SYTL4Q96C24 671 aaPredicted RBP11.45□□□□□ -0.58
CD44-206ENST00000415148 KINO60870 393 aaKnown RBP11.45□□□□□ -0.58
CD44-206ENST00000415148 HSPD1P10809 573 aaKnown RBP11.45□□□□□ -0.58
CD44-206ENST00000415148 PDIA3P30101 505 aaKnown RBP11.45□□□□□ -0.58
CD44-206ENST00000415148 APOBRQ0VD83 1088 aa11.45□□□□□ -0.58
CD44-206ENST00000415148 LRRC8AQ8IWT6 810 aa11.45□□□□□ -0.58
CD44-206ENST00000415148 NAT10Q9H0A0 1025 aaKnown RBP11.45□□□□□ -0.58
CD44-206ENST00000415148 C19orf44Q9H6X5 657 aa11.45□□□□□ -0.58
CD44-206ENST00000415148 KCND1Q9NSA2 647 aa11.45□□□□□ -0.58
CD44-206ENST00000415148 TRMT1Q9NXH9 659 aaKnown RBP11.45□□□□□ -0.58
CD44-206ENST00000415148 A0A1W2PQ27 194 aa11.44□□□□□ -0.58
CD44-206ENST00000415148 A0A1W2PQ64 194 aa11.44□□□□□ -0.58
CD44-206ENST00000415148 A0A1W2PQD8 194 aa11.44□□□□□ -0.58
CD44-206ENST00000415148 ATP5J2-PTCD1G3V325 749 aa11.44□□□□□ -0.58
CD44-206ENST00000415148 GOLIM4O00461 696 aa11.44□□□□□ -0.58
CD44-206ENST00000415148 PTCD1O75127 700 aaKnown RBP11.44□□□□□ -0.58
CD44-206ENST00000415148 CABP4P57796 275 aa11.44□□□□□ -0.58
CD44-206ENST00000415148 NEUROD6Q96NK8 337 aa11.44□□□□□ -0.58
CD44-206ENST00000415148 CWC25Q9NXE8 425 aaPredicted RBP11.44□□□□□ -0.58
CD44-206ENST00000415148 RTEL1Q9NZ71 1219 aa11.44□□□□□ -0.58
CD44-206ENST00000415148 CCDC9Q9Y3X0 531 aaKnown RBP11.44□□□□□ -0.58
CD44-206ENST00000415148 PARP4Q9UKK3 1724 aaKnown RBP11.44□□□□□ -0.58
CD44-206ENST00000415148 CYP27B1O15528 508 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 PIP4K2AP48426 406 aaPredicted RBP11.43□□□□□ -0.58
CD44-206ENST00000415148 ADALQ6DHV7 355 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 LRRN4CLQ8ND94 238 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 USP28Q96RU2 1077 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 FEZ1Q99689 392 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 FBXO3Q9UK99 471 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 ZNF215Q9UL58 517 aaPredicted RBP11.43□□□□□ -0.58
CD44-206ENST00000415148 GLI3P10071 1580 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 KDM4FA0A1W2PPD8 638 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 BECN2A8MW95 431 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 EYA2O00167 538 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 GUCY1B3Q02153 619 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 DHX8Q14562 1220 aaKnown RBP11.43□□□□□ -0.58
CD44-206ENST00000415148 CEP135Q66GS9 1140 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 DHX40Q8IX18 779 aaKnown RBP11.43□□□□□ -0.58
CD44-206ENST00000415148 CCDC191Q8NCU4 936 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 BPIFA3Q9BQP9 254 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 ST7Q9NRC1 585 aa11.43□□□□□ -0.58
CD44-206ENST00000415148 DHX16O60231 1041 aaKnown RBP11.42□□□□□ -0.58
CD44-206ENST00000415148 ZFYP08048 801 aaPredicted RBP11.42□□□□□ -0.58
CD44-206ENST00000415148 IFIT1P09914 478 aaKnown RBP11.42□□□□□ -0.58
CD44-206ENST00000415148 CCZ1BP86790 482 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 CCZ1P86791 482 aaPredicted RBP11.42□□□□□ -0.58
CD44-206ENST00000415148 KMT5BQ4FZB7 885 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 FILIP1Q7Z7B0 1213 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 PROSER2Q86WR7 435 aaPredicted RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 159.4 ms