RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SLC4A2P04920 1241 aa36.48■■■■□ 3.43
HMGB1-205ENST00000399494 RGS19P49795 217 aa36.48■■■■□ 3.43
HMGB1-205ENST00000399494 TWISTNBQ3B726 338 aaPredicted RBP36.48■■■■□ 3.43
HMGB1-205ENST00000399494 FAM161AQ3B820 660 aa36.48■■■■□ 3.43
HMGB1-205ENST00000399494 SALL2Q9Y467 1007 aaPredicted RBP36.47■■■■□ 3.43
HMGB1-205ENST00000399494 MED23Q9ULK4 1368 aa36.46■■■■□ 3.43
HMGB1-205ENST00000399494 SLC10A3P09131 477 aa36.46■■■■□ 3.43
HMGB1-205ENST00000399494 CCT4P50991 539 aaKnown RBP36.46■■■■□ 3.43
HMGB1-205ENST00000399494 DGKZQ13574 1117 aa36.46■■■■□ 3.43
HMGB1-205ENST00000399494 SAGE1Q9NXZ1 904 aa36.46■■■■□ 3.43
HMGB1-205ENST00000399494 NCBP3Q53F19 620 aaKnown RBP36.45■■■■□ 3.43
HMGB1-205ENST00000399494 PITPNM2Q9BZ72 1349 aa36.44■■■■□ 3.42
HMGB1-205ENST00000399494 UBE3BQ7Z3V4 1068 aa36.44■■■■□ 3.42
HMGB1-205ENST00000399494 CSRNP1Q96S65 589 aa36.44■■■■□ 3.42
HMGB1-205ENST00000399494 RNF186Q9NXI6 227 aa36.44■■■■□ 3.42
HMGB1-205ENST00000399494 DACT2Q5SW24 774 aa36.42■■■■□ 3.42
HMGB1-205ENST00000399494 MYH3P11055 1940 aa36.42■■■■□ 3.42
HMGB1-205ENST00000399494 IL16Q14005 1332 aa36.41■■■■□ 3.42
HMGB1-205ENST00000399494 TRPA1O75762 1119 aa36.41■■■■□ 3.42
HMGB1-205ENST00000399494 FKBP1BP68106 108 aa36.41■■■■□ 3.42
HMGB1-205ENST00000399494 GCKRQ14397 625 aa36.41■■■■□ 3.42
HMGB1-205ENST00000399494 TXNRD3Q86VQ6 643 aa36.41■■■■□ 3.42
HMGB1-205ENST00000399494 MXD3Q9BW11 206 aa36.41■■■■□ 3.42
HMGB1-205ENST00000399494 PLA2G12BQ9BX93 195 aa36.41■■■■□ 3.42
HMGB1-205ENST00000399494 LEMD3Q9Y2U8 911 aa36.41■■■■□ 3.42
HMGB1-205ENST00000399494 NBPF9Q3BBW0 867 aa36.4■■■■□ 3.42
HMGB1-205ENST00000399494 COA1Q9GZY4 146 aa36.4■■■■□ 3.42
HMGB1-205ENST00000399494 SCAF8Q9UPN6 1271 aaKnown RBP36.4■■■■□ 3.42
HMGB1-205ENST00000399494 CASP7P55210 303 aa36.39■■■■□ 3.42
HMGB1-205ENST00000399494 MLLT1Q03111 559 aaPredicted RBP36.39■■■■□ 3.42
HMGB1-205ENST00000399494 IGHMBP2P38935 993 aaKnown RBP36.38■■■■□ 3.41
HMGB1-205ENST00000399494 FLIIQ13045 1269 aa36.38■■■■□ 3.41
HMGB1-205ENST00000399494 STRIP1Q5VSL9 837 aa36.38■■■■□ 3.41
HMGB1-205ENST00000399494 RASAL3Q86YV0 1011 aa36.38■■■■□ 3.41
HMGB1-205ENST00000399494 SPEF2Q9C093 1822 aa36.38■■■■□ 3.41
HMGB1-205ENST00000399494 CSF1RP07333 972 aa36.37■■■■□ 3.41
HMGB1-205ENST00000399494 ITGA6P23229 1130 aa36.37■■■■□ 3.41
HMGB1-205ENST00000399494 MIER1Q8N108 512 aa36.37■■■■□ 3.41
HMGB1-205ENST00000399494 MOB2Q70IA6 237 aa36.35■■■■□ 3.41
HMGB1-205ENST00000399494 REM2Q8IYK8 340 aaPredicted RBP36.35■■■■□ 3.41
HMGB1-205ENST00000399494 OGFOD1Q8N543 542 aa36.35■■■■□ 3.41
HMGB1-205ENST00000399494 ZNF804BA4D1E1 1349 aa36.34■■■■□ 3.41
HMGB1-205ENST00000399494 MYO3BQ8WXR4 1341 aa36.34■■■■□ 3.41
HMGB1-205ENST00000399494 PRAMEF18Q5VWM3 479 aa36.34■■■■□ 3.41
HMGB1-205ENST00000399494 DNAAF4Q8WXU2 420 aa36.34■■■■□ 3.41
HMGB1-205ENST00000399494 FBXW7Q969H0 707 aa36.34■■■■□ 3.41
HMGB1-205ENST00000399494 ANKRD2Q9GZV1 360 aa36.34■■■■□ 3.41
HMGB1-205ENST00000399494 WNT10BO00744 389 aa36.33■■■■□ 3.41
HMGB1-205ENST00000399494 LINS1Q8NG48 757 aa36.33■■■■□ 3.41
HMGB1-205ENST00000399494 ZNF646O15015 1829 aaPredicted RBP36.33■■■■□ 3.41
HMGB1-205ENST00000399494 FKBP5Q13451 457 aaPredicted RBP36.32■■■■□ 3.4
HMGB1-205ENST00000399494 TTLL5Q6EMB2 1281 aa36.32■■■■□ 3.4
HMGB1-205ENST00000399494 MPHOSPH8Q99549 860 aa36.32■■■■□ 3.4
HMGB1-205ENST00000399494 MYH16Q9H6N6 1097 aa36.32■■■■□ 3.4
HMGB1-205ENST00000399494 PAPPA2Q9BXP8 1791 aa36.32■■■■□ 3.4
HMGB1-205ENST00000399494 AKAP11Q9UKA4 1901 aa36.32■■■■□ 3.4
HMGB1-205ENST00000399494 UBE2Q2LH0YL09 131 aa36.31■■■■□ 3.4
HMGB1-205ENST00000399494 VAMP4O75379 141 aa36.31■■■■□ 3.4
HMGB1-205ENST00000399494 KLRK1P26718 216 aa36.31■■■■□ 3.4
HMGB1-205ENST00000399494 MMP14P50281 582 aa36.31■■■■□ 3.4
HMGB1-205ENST00000399494 WDR63Q8IWG1 891 aa36.31■■■■□ 3.4
HMGB1-205ENST00000399494 FANCIQ9NVI1 1328 aa36.3■■■■□ 3.4
HMGB1-205ENST00000399494 CHRNDQ07001 517 aa36.28■■■■□ 3.4
HMGB1-205ENST00000399494 SASH1O94885 1247 aa36.25■■■■□ 3.39
HMGB1-205ENST00000399494 GTF2IP78347 998 aa36.25■■■■□ 3.39
HMGB1-205ENST00000399494 KIAA0825Q8IV33 1275 aa36.25■■■■□ 3.39
HMGB1-205ENST00000399494 ZBED3Q96IU2 234 aaPredicted RBP36.25■■■■□ 3.39
HMGB1-205ENST00000399494 ANKRD18BA2A2Z9 1011 aa36.24■■■■□ 3.39
HMGB1-205ENST00000399494 CD209Q9NNX6 404 aa36.24■■■■□ 3.39
HMGB1-205ENST00000399494 FOXO4P98177 505 aa36.23■■■■□ 3.39
HMGB1-205ENST00000399494 EXOSC9Q06265 439 aaKnown RBP36.23■■■■□ 3.39
HMGB1-205ENST00000399494 TTLL12Q14166 644 aaPredicted RBP36.23■■■■□ 3.39
HMGB1-205ENST00000399494 SNAP23O00161 211 aa36.22■■■■□ 3.39
HMGB1-205ENST00000399494 KCNJ4P48050 445 aa36.22■■■■□ 3.39
HMGB1-205ENST00000399494 HDAC9Q9UKV0 1011 aa36.22■■■■□ 3.39
HMGB1-205ENST00000399494 IRS2Q9Y4H2 1338 aa36.22■■■■□ 3.39
HMGB1-205ENST00000399494 CACNA1FO60840 1977 aa36.21■■■■□ 3.39
HMGB1-205ENST00000399494 NF2P35240 595 aa36.21■■■■□ 3.39
HMGB1-205ENST00000399494 TAF5LO75529 589 aa36.2■■■■□ 3.39
HMGB1-205ENST00000399494 BEND3Q5T5X7 828 aa36.2■■■■□ 3.39
HMGB1-205ENST00000399494 C15orf52Q6ZUT6 534 aaKnown RBP36.2■■■■□ 3.39
HMGB1-205ENST00000399494 HELBQ8NG08 1087 aaPredicted RBP36.2■■■■□ 3.39
HMGB1-205ENST00000399494 F6X3S4 739 aa36.19■■■■□ 3.38
HMGB1-205ENST00000399494 TM4SF4P48230 202 aa36.19■■■■□ 3.38
HMGB1-205ENST00000399494 CTU1Q7Z7A3 348 aaKnown RBP36.19■■■■□ 3.38
HMGB1-205ENST00000399494 IFIT5Q13325 482 aaKnown RBP36.18■■■■□ 3.38
HMGB1-205ENST00000399494 APOBEC3FQ8IUX4 373 aaKnown RBP36.18■■■■□ 3.38
HMGB1-205ENST00000399494 PTPN12Q05209 780 aaKnown RBP36.17■■■■□ 3.38
HMGB1-205ENST00000399494 TBC1D8O95759 1140 aa36.16■■■■□ 3.38
HMGB1-205ENST00000399494 CERS5Q8N5B7 392 aa36.16■■■■□ 3.38
HMGB1-205ENST00000399494 SPINK5Q9NQ38 1064 aaPredicted RBP36.16■■■■□ 3.38
HMGB1-205ENST00000399494 ARMC9Q7Z3E5 817 aa36.15■■■■□ 3.38
HMGB1-205ENST00000399494 PRKG1Q13976 671 aa36.14■■■■□ 3.38
HMGB1-205ENST00000399494 LDLRAD1Q5T700 205 aa36.14■■■■□ 3.38
HMGB1-205ENST00000399494 ZNF521Q96K83 1311 aa36.13■■■■□ 3.37
HMGB1-205ENST00000399494 IL1R1P14778 569 aa36.13■■■■□ 3.37
HMGB1-205ENST00000399494 DLGAP5Q15398 846 aa36.13■■■■□ 3.37
HMGB1-205ENST00000399494 EPHA10Q5JZY3 1008 aa36.13■■■■□ 3.37
HMGB1-205ENST00000399494 LMBR1LQ6UX01 489 aa36.13■■■■□ 3.37
HMGB1-205ENST00000399494 MTMR14Q8NCE2 650 aa36.13■■■■□ 3.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms