RNA–Protein interactions for RNA: ENST00000394609.6

RTN4-205, Transcript of reticulon 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN4, Length 1,898 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-205ENST00000394609 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.51□□□□□ -1.05
RTN4-205ENST00000394609 N4BP2Q86UW6 1770 aaPredicted RBP8.5□□□□□ -1.05
RTN4-205ENST00000394609 G3BP1Q13283 466 aaKnown RBP eCLIP8.5□□□□□ -1.053e-16■□□□□ 9.4
RTN4-205ENST00000394609 RABL6Q3YEC7 729 aaPredicted RBP8.5□□□□□ -1.05
RTN4-205ENST00000394609 TBC1D9Q6ZT07 1266 aa8.5□□□□□ -1.05
RTN4-205ENST00000394609 LINC00116Q8NCU8 138 aa8.5□□□□□ -1.05
RTN4-205ENST00000394609 PRKD2Q9BZL6 878 aa8.5□□□□□ -1.05
RTN4-205ENST00000394609 UPF2Q9HAU5 1272 aaKnown RBP8.5□□□□□ -1.05
RTN4-205ENST00000394609 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.5□□□□□ -1.05
RTN4-205ENST00000394609 ATRNO75882 1429 aa8.5□□□□□ -1.05
RTN4-205ENST00000394609 SALL3Q9BXA9 1300 aa8.49□□□□□ -1.05
RTN4-205ENST00000394609 GFRA3O60609 400 aa8.49□□□□□ -1.05
RTN4-205ENST00000394609 SASH1O94885 1247 aa8.49□□□□□ -1.05
RTN4-205ENST00000394609 APLP1P51693 650 aa8.49□□□□□ -1.05
RTN4-205ENST00000394609 TRIM28Q13263 835 aaKnown RBP8.49□□□□□ -1.05
RTN4-205ENST00000394609 NLRP10Q86W26 655 aa8.49□□□□□ -1.05
RTN4-205ENST00000394609 ARHGEF1Q92888 912 aaKnown RBP8.49□□□□□ -1.05
RTN4-205ENST00000394609 CCDC85AQ96PX6 553 aaPredicted RBP8.49□□□□□ -1.05
RTN4-205ENST00000394609 OSBPL3Q9H4L5 887 aa8.49□□□□□ -1.05
RTN4-205ENST00000394609 DAXXQ9UER7 740 aaPredicted RBP8.49□□□□□ -1.05
RTN4-205ENST00000394609 FAM177BA6PVY3 158 aa8.49□□□□□ -1.05
RTN4-205ENST00000394609 RFX5P48382 616 aaPredicted RBP8.49□□□□□ -1.05
RTN4-205ENST00000394609 PTPN12Q05209 780 aaKnown RBP8.49□□□□□ -1.05
RTN4-205ENST00000394609 SWT1Q5T5J6 900 aaKnown RBP8.49□□□□□ -1.05
RTN4-205ENST00000394609 PPP1R18Q6NYC8 613 aa8.49□□□□□ -1.05
RTN4-205ENST00000394609 ERC1Q8IUD2 1116 aa8.49□□□□□ -1.05
RTN4-205ENST00000394609 CLASRPQ8N2M8 674 aaKnown RBP8.49□□□□□ -1.05
RTN4-205ENST00000394609 ERVV-1B6SEH8 477 aa8.48□□□□□ -1.05
RTN4-205ENST00000394609 CDC45O75419 566 aa8.48□□□□□ -1.05
RTN4-205ENST00000394609 MAP4K4O95819 1239 aaPredicted RBP8.48□□□□□ -1.05
RTN4-205ENST00000394609 PCCAP05165 728 aaPredicted RBP8.48□□□□□ -1.05
RTN4-205ENST00000394609 HSP90AB3PQ58FF7 597 aa8.48□□□□□ -1.05
RTN4-205ENST00000394609 AACSQ86V21 672 aa8.48□□□□□ -1.05
RTN4-205ENST00000394609 ZBTB38Q8NAP3 1195 aaPredicted RBP8.48□□□□□ -1.05
RTN4-205ENST00000394609 NPDC1Q9NQX5 325 aaPredicted RBP8.48□□□□□ -1.05
RTN4-205ENST00000394609 STAP2Q9UGK3 403 aa8.48□□□□□ -1.05
RTN4-205ENST00000394609 TRMT112Q9UI30 125 aaKnown RBP8.48□□□□□ -1.05
RTN4-205ENST00000394609 ARFGEF2Q9Y6D5 1785 aa8.48□□□□□ -1.05
RTN4-205ENST00000394609 UBN2Q6ZU65 1347 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 NRG2O14511 850 aaPredicted RBP8.47□□□□□ -1.05
RTN4-205ENST00000394609 CAMTA2O94983 1202 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 IFIT2P09913 472 aaKnown RBP8.47□□□□□ -1.05
RTN4-205ENST00000394609 GLIPR1L2Q4G1C9 344 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 RILPL2Q969X0 211 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 EAF2Q96CJ1 260 aaPredicted RBP8.47□□□□□ -1.05
RTN4-205ENST00000394609 ZNF594Q96JF6 807 aaPredicted RBP8.47□□□□□ -1.05
RTN4-205ENST00000394609 TBC1D32Q96NH3 1257 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 CCDC8Q9H0W5 538 aaPredicted RBP8.47□□□□□ -1.05
RTN4-205ENST00000394609 COPRSQ9NQ92 184 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 CCNL1Q9UK58 526 aaPredicted RBP8.47□□□□□ -1.05
RTN4-205ENST00000394609 COL15A1P39059 1388 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 TFCP2Q12800 502 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 ZNF34Q8IZ26 560 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 C22orf23Q9BZE7 217 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 BRPF3Q9ULD4 1205 aa8.47□□□□□ -1.05
RTN4-205ENST00000394609 THSD7AQ9UPZ6 1657 aa8.46□□□□□ -1.05
RTN4-205ENST00000394609 EP400Q96L91 3159 aa8.46□□□□□ -1.06
RTN4-205ENST00000394609 L1TD1Q5T7N2 865 aaKnown RBP8.46□□□□□ -1.06
RTN4-205ENST00000394609 SUSD4Q5VX71 490 aa8.46□□□□□ -1.06
RTN4-205ENST00000394609 KRT27Q7Z3Y8 459 aa8.46□□□□□ -1.06
RTN4-205ENST00000394609 PI4K2BQ8TCG2 481 aa8.46□□□□□ -1.06
RTN4-205ENST00000394609 TMUB1Q9BVT8 246 aa8.46□□□□□ -1.06
RTN4-205ENST00000394609 TLR7Q9NYK1 1049 aaKnown RBP8.46□□□□□ -1.06
RTN4-205ENST00000394609 NIP7Q9Y221 180 aaKnown RBP eCLIP8.46□□□□□ -1.06
RTN4-205ENST00000394609 TJP1Q07157 1748 aa8.46□□□□□ -1.06
RTN4-205ENST00000394609 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.45□□□□□ -1.06
RTN4-205ENST00000394609 IRS4O14654 1257 aaPredicted RBP8.45□□□□□ -1.06
RTN4-205ENST00000394609 GNPATO15228 680 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 TRIM37O94972 964 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 HCLS1P14317 486 aaPredicted RBP8.45□□□□□ -1.06
RTN4-205ENST00000394609 CCDC57Q2TAC2 916 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 LRRC24Q50LG9 513 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 ZNF516Q92618 1163 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 PUS3Q9BZE2 481 aaKnown RBP8.45□□□□□ -1.06
RTN4-205ENST00000394609 NUP188Q5SRE5 1749 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 ZNF772Q68DY9 489 aaPredicted RBP8.45□□□□□ -1.06
RTN4-205ENST00000394609 CASC1Q6TDU7 716 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 FAM196AQ6ZSG2 479 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 ATG9AQ7Z3C6 839 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 AMIGO3Q86WK7 504 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 ECHDC1Q9NTX5 307 aa8.45□□□□□ -1.06
RTN4-205ENST00000394609 AOX1Q06278 1338 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 CNTNAP4Q9C0A0 1308 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 CSF1RP07333 972 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 RBM6P78332 1123 aaKnown RBP8.44□□□□□ -1.06
RTN4-205ENST00000394609 IFIT5Q13325 482 aaKnown RBP8.44□□□□□ -1.06
RTN4-205ENST00000394609 TNNI3KQ59H18 835 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 TAF7LQ5H9L4 462 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 TRAF7Q6Q0C0 670 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 BICDL1Q6ZP65 573 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 TTLL11Q8NHH1 800 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 GPATCH3Q96I76 525 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 UTP14AQ9BVJ6 771 aaKnown RBP8.44□□□□□ -1.06
RTN4-205ENST00000394609 PLA2G12BQ9BX93 195 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 GREM2Q9H772 168 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 LRRC4BQ9NT99 713 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 SRP68Q9UHB9 627 aaKnown RBP8.44□□□□□ -1.06
RTN4-205ENST00000394609 FPGT-TNNI3KV9GXZ4 949 aa8.44□□□□□ -1.06
RTN4-205ENST00000394609 AFDNP55196 1824 aaKnown RBP8.44□□□□□ -1.06
RTN4-205ENST00000394609 TTC41PQ6P2S7 1318 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms