RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.17□□□□□ -0.3
CUX1-204ENST00000393824 AOX1Q06278 1338 aa13.17□□□□□ -0.3
CUX1-204ENST00000393824 FOXD4L6Q3SYB3 417 aaPredicted RBP13.16□□□□□ -0.3
CUX1-204ENST00000393824 TBC1D9BQ66K14 1250 aa13.16□□□□□ -0.3
CUX1-204ENST00000393824 FOXD4L3Q6VB84 417 aaPredicted RBP13.16□□□□□ -0.3
CUX1-204ENST00000393824 CCDC85AQ96PX6 553 aaPredicted RBP13.16□□□□□ -0.3
CUX1-204ENST00000393824 CAMKK2Q96RR4 588 aa13.16□□□□□ -0.3
CUX1-204ENST00000393824 FOXO4P98177 505 aa13.16□□□□□ -0.3
CUX1-204ENST00000393824 TRIM28Q13263 835 aaKnown RBP13.16□□□□□ -0.3
CUX1-204ENST00000393824 KIF18AQ8NI77 898 aa13.16□□□□□ -0.3
CUX1-204ENST00000393824 NIP7Q9Y221 180 aaKnown RBP eCLIP13.16□□□□□ -0.32e-10■■■■■ 60.1
CUX1-204ENST00000393824 CNPY2Q9Y2B0 182 aa13.16□□□□□ -0.3
CUX1-204ENST00000393824 ZSCAN22P10073 491 aaPredicted RBP13.15□□□□□ -0.3
CUX1-204ENST00000393824 NUTM1Q86Y26 1132 aa13.15□□□□□ -0.3
CUX1-204ENST00000393824 SSH3Q8TE77 659 aa13.15□□□□□ -0.3
CUX1-204ENST00000393824 FAM53CQ9NYF3 392 aa13.15□□□□□ -0.3
CUX1-204ENST00000393824 NARFQ9UHQ1 456 aa13.15□□□□□ -0.3
CUX1-204ENST00000393824 IRX5P78411 483 aaPredicted RBP13.14□□□□□ -0.31
CUX1-204ENST00000393824 PLCB2Q00722 1185 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 POLA2Q14181 598 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 CCDC24Q8N4L8 307 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 AKT1S1Q96B36 256 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 UBR3Q6ZT12 1888 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 C4AP0C0L4 1744 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 USP42Q9H9J4 1324 aaKnown RBP13.14□□□□□ -0.31
CUX1-204ENST00000393824 CHMLP26374 656 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 TRAPPC3LQ5T215 181 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 GIMAP6Q6P9H5 292 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 LRRCC1Q9C099 1032 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 ATP6V1DQ9Y5K8 247 aa13.14□□□□□ -0.31
CUX1-204ENST00000393824 MTX1Q13505 466 aa13.13□□□□□ -0.31
CUX1-204ENST00000393824 LMBR1LQ6UX01 489 aa13.13□□□□□ -0.31
CUX1-204ENST00000393824 CREBRFQ8IUR6 639 aa13.13□□□□□ -0.31
CUX1-204ENST00000393824 KRT222Q8N1A0 295 aa13.13□□□□□ -0.31
CUX1-204ENST00000393824 ZBTB38Q8NAP3 1195 aaPredicted RBP13.13□□□□□ -0.31
CUX1-204ENST00000393824 SPC24Q8NBT2 197 aa13.13□□□□□ -0.31
CUX1-204ENST00000393824 SECISBP2LQ93073 1101 aaKnown RBP13.13□□□□□ -0.31
CUX1-204ENST00000393824 PDGFDQ9GZP0 370 aaPredicted RBP13.13□□□□□ -0.31
CUX1-204ENST00000393824 TRMT112Q9UI30 125 aaKnown RBP13.13□□□□□ -0.31
CUX1-204ENST00000393824 ZBTB22O15209 634 aa13.13□□□□□ -0.31
CUX1-204ENST00000393824 CCDC192P0DO97 292 aa13.13□□□□□ -0.31
CUX1-204ENST00000393824 RABL6Q3YEC7 729 aaPredicted RBP13.13□□□□□ -0.31
CUX1-204ENST00000393824 TIGD1Q96MW7 591 aa13.13□□□□□ -0.31
CUX1-204ENST00000393824 PTGS1P23219 599 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 RFC4P35249 363 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 KCNJ4P48050 445 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 C3orf67Q6ZVT6 689 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 TFCP2L1Q9NZI6 479 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 BCORQ6W2J9 1755 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 TUBGCP6Q96RT7 1819 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 NTSR2O95665 410 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 PCCAP05165 728 aaPredicted RBP13.12□□□□□ -0.31
CUX1-204ENST00000393824 TNNT1P13805 278 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 RFX5P48382 616 aaPredicted RBP13.12□□□□□ -0.31
CUX1-204ENST00000393824 IRX3P78415 501 aaPredicted RBP13.12□□□□□ -0.31
CUX1-204ENST00000393824 NOL8Q76FK4 1167 aaKnown RBP13.12□□□□□ -0.31
CUX1-204ENST00000393824 COL23A1Q86Y22 540 aaPredicted RBP13.12□□□□□ -0.31
CUX1-204ENST00000393824 CCDC112Q8NEF3 446 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 FAM200AQ8TCP9 573 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 SIL1Q9H173 461 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 ANKRD36CQ5JPF3 1778 aa13.12□□□□□ -0.31
CUX1-204ENST00000393824 TULP2O00295 520 aa13.11□□□□□ -0.31
CUX1-204ENST00000393824 STX6O43752 255 aa13.11□□□□□ -0.31
CUX1-204ENST00000393824 ZPR1O75312 459 aa13.11□□□□□ -0.31
CUX1-204ENST00000393824 F13A1P00488 732 aa13.11□□□□□ -0.31
CUX1-204ENST00000393824 GYS1P13807 737 aa13.11□□□□□ -0.31
CUX1-204ENST00000393824 HSP90AB3PQ58FF7 597 aa13.11□□□□□ -0.31
CUX1-204ENST00000393824 DNAJC2Q99543 621 aaKnown RBP13.11□□□□□ -0.31
CUX1-204ENST00000393824 SCN7AQ01118 1682 aa13.11□□□□□ -0.31
CUX1-204ENST00000393824 IRS4O14654 1257 aaPredicted RBP13.11□□□□□ -0.31
CUX1-204ENST00000393824 SURF6O75683 361 aaKnown RBP13.11□□□□□ -0.31
CUX1-204ENST00000393824 CLEC4GQ6UXB4 293 aa13.11□□□□□ -0.31
CUX1-204ENST00000393824 ZNF397Q8NF99 534 aaPredicted RBP13.11□□□□□ -0.31
CUX1-204ENST00000393824 ZNF594Q96JF6 807 aaPredicted RBP13.11□□□□□ -0.31
CUX1-204ENST00000393824 UPF3BQ9BZI7 483 aaKnown RBP13.11□□□□□ -0.31
CUX1-204ENST00000393824 ANO2Q9NQ90 1003 aa13.11□□□□□ -0.31
CUX1-204ENST00000393824 CALCOCO1Q9P1Z2 691 aa13.11□□□□□ -0.31
CUX1-204ENST00000393824 PNPLA7Q6ZV29 1317 aa13.1□□□□□ -0.31
CUX1-204ENST00000393824 SYT1P21579 422 aa13.1□□□□□ -0.31
CUX1-204ENST00000393824 HSPA4P34932 840 aa13.1□□□□□ -0.31
CUX1-204ENST00000393824 NFIXQ14938 502 aa13.1□□□□□ -0.31
CUX1-204ENST00000393824 CCDC186Q7Z3E2 898 aa13.1□□□□□ -0.31
CUX1-204ENST00000393824 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.1□□□□□ -0.31
CUX1-204ENST00000393824 C16orf45Q96MC5 204 aaPredicted RBP13.1□□□□□ -0.31
CUX1-204ENST00000393824 CHMP3Q9Y3E7 222 aa13.1□□□□□ -0.31
CUX1-204ENST00000393824 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.1□□□□□ -0.31
CUX1-204ENST00000393824 PTPN12Q05209 780 aaKnown RBP13.1□□□□□ -0.31
CUX1-204ENST00000393824 ERFEQ4G0M1 354 aa13.1□□□□□ -0.31
CUX1-204ENST00000393824 RGS22Q8NE09 1264 aa13.1□□□□□ -0.31
CUX1-204ENST00000393824 IL1RAPL2Q9NP60 686 aa13.1□□□□□ -0.31
CUX1-204ENST00000393824 COL4A1P02462 1669 aa13.09□□□□□ -0.31
CUX1-204ENST00000393824 ABCC12Q96J65 1359 aa13.09□□□□□ -0.31
CUX1-204ENST00000393824 NAA30Q147X3 362 aaPredicted RBP13.09□□□□□ -0.31
CUX1-204ENST00000393824 TSHZ3Q63HK5 1081 aa13.09□□□□□ -0.31
CUX1-204ENST00000393824 UTP14AQ9BVJ6 771 aaKnown RBP13.09□□□□□ -0.31
CUX1-204ENST00000393824 GREM2Q9H772 168 aa13.09□□□□□ -0.31
CUX1-204ENST00000393824 FIBPO43427 364 aa13.08□□□□□ -0.31
CUX1-204ENST00000393824 ZSCAN25Q6NSZ9 544 aa13.08□□□□□ -0.31
CUX1-204ENST00000393824 TTLL11Q8NHH1 800 aa13.08□□□□□ -0.31
CUX1-204ENST00000393824 ZNF652Q9Y2D9 606 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms