RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MYCNP04198 464 aaPredicted RBP12.48□□□□□ -0.41
VPS53-202ENST00000389040 SLC4A3P48751 1232 aa12.48□□□□□ -0.41
VPS53-202ENST00000389040 NBR1Q14596 966 aa12.48□□□□□ -0.41
VPS53-202ENST00000389040 PUM3Q15397 648 aaKnown RBP12.48□□□□□ -0.41
VPS53-202ENST00000389040 BMP2KLQ5H9B9 411 aa12.48□□□□□ -0.41
VPS53-202ENST00000389040 VGLL2Q8N8G2 317 aa12.48□□□□□ -0.41
VPS53-202ENST00000389040 PUS3Q9BZE2 481 aaKnown RBP12.48□□□□□ -0.41
VPS53-202ENST00000389040 GPR108Q9NPR9 543 aa12.48□□□□□ -0.41
VPS53-202ENST00000389040 SURF6O75683 361 aaKnown RBP12.47□□□□□ -0.41
VPS53-202ENST00000389040 LRRC24Q50LG9 513 aa12.47□□□□□ -0.41
VPS53-202ENST00000389040 C9orf131Q5VYM1 1079 aa12.47□□□□□ -0.41
VPS53-202ENST00000389040 PODNQ7Z5L7 613 aa12.47□□□□□ -0.41
VPS53-202ENST00000389040 LARGE2Q8N3Y3 721 aa12.47□□□□□ -0.41
VPS53-202ENST00000389040 KLHDC4Q8TBB5 520 aa12.47□□□□□ -0.41
VPS53-202ENST00000389040 LPIN2Q92539 896 aa12.47□□□□□ -0.41
VPS53-202ENST00000389040 PPIP5K2O43314 1243 aa12.47□□□□□ -0.41
VPS53-202ENST00000389040 IFIT1P09914 478 aaKnown RBP12.47□□□□□ -0.41
VPS53-202ENST00000389040 COA1Q9GZY4 146 aa12.47□□□□□ -0.41
VPS53-202ENST00000389040 ZNF277Q9NRM2 450 aaPredicted RBP12.47□□□□□ -0.41
VPS53-202ENST00000389040 FZD9O00144 591 aa12.46□□□□□ -0.42
VPS53-202ENST00000389040 RASSF7Q02833 373 aa12.46□□□□□ -0.42
VPS53-202ENST00000389040 NIM1KQ8IY84 436 aa12.46□□□□□ -0.42
VPS53-202ENST00000389040 SIL1Q9H173 461 aa12.46□□□□□ -0.42
VPS53-202ENST00000389040 RNF181Q9P0P0 153 aa12.46□□□□□ -0.42
VPS53-202ENST00000389040 ZNRF3Q9ULT6 936 aa12.46□□□□□ -0.42
VPS53-202ENST00000389040 PA2G4Q9UQ80 394 aaKnown RBP12.46□□□□□ -0.42
VPS53-202ENST00000389040 ATXN8OSP0DMR3 200 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 FGFR2P21802 821 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 CAVIN4Q5BKX8 364 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 DPY19L2Q6NUT2 758 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 UTRNP46939 3433 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 G3V3G9 751 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 TAF5LO75529 589 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 SLC5A1P13866 664 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 MMP14P50281 582 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 MFAP1P55081 439 aaKnown RBP12.45□□□□□ -0.42
VPS53-202ENST00000389040 OS9Q13438 667 aaPredicted RBP12.45□□□□□ -0.42
VPS53-202ENST00000389040 BECN1Q14457 450 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 DCAF8Q5TAQ9 597 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 ZNF804AQ7Z570 1209 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 KIF1BPQ96EK5 621 aa12.45□□□□□ -0.42
VPS53-202ENST00000389040 FER1L6Q2WGJ9 1857 aa12.44□□□□□ -0.42
VPS53-202ENST00000389040 AOC3Q16853 763 aa12.44□□□□□ -0.42
VPS53-202ENST00000389040 HELBQ8NG08 1087 aaPredicted RBP12.44□□□□□ -0.42
VPS53-202ENST00000389040 C22orf23Q9BZE7 217 aa12.44□□□□□ -0.42
VPS53-202ENST00000389040 IRS2Q9Y4H2 1338 aa12.43□□□□□ -0.42
VPS53-202ENST00000389040 SASH1O94885 1247 aa12.43□□□□□ -0.42
VPS53-202ENST00000389040 PRELPP51888 382 aa12.43□□□□□ -0.42
VPS53-202ENST00000389040 EIF6P56537 245 aaKnown RBP12.43□□□□□ -0.42
VPS53-202ENST00000389040 TNIP1Q15025 636 aa12.43□□□□□ -0.42
VPS53-202ENST00000389040 ATP2B3Q16720 1220 aa12.43□□□□□ -0.42
VPS53-202ENST00000389040 COL4A1P02462 1669 aa12.43□□□□□ -0.42
VPS53-202ENST00000389040 IL1R1P14778 569 aa12.43□□□□□ -0.42
VPS53-202ENST00000389040 HIBADHP31937 336 aaKnown RBP12.43□□□□□ -0.42
VPS53-202ENST00000389040 TFCP2Q12800 502 aa12.43□□□□□ -0.42
VPS53-202ENST00000389040 FBXO33Q7Z6M2 555 aa12.43□□□□□ -0.42
VPS53-202ENST00000389040 LTBP1Q14766 1721 aa12.42□□□□□ -0.42
VPS53-202ENST00000389040 DUOX1Q9NRD9 1551 aa12.42□□□□□ -0.42
VPS53-202ENST00000389040 VPS37DQ86XT2 251 aa12.42□□□□□ -0.42
VPS53-202ENST00000389040 PLEKHM2Q8IWE5 1019 aa12.42□□□□□ -0.42
VPS53-202ENST00000389040 GPC2Q8N158 579 aa12.42□□□□□ -0.42
VPS53-202ENST00000389040 GNL3LQ9NVN8 582 aaKnown RBP12.42□□□□□ -0.42
VPS53-202ENST00000389040 GLTPD2A6NH11 291 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 RIMBP2O15034 1052 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 SEMA3EO15041 775 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 CLASRPQ8N2M8 674 aaKnown RBP12.41□□□□□ -0.42
VPS53-202ENST00000389040 RHPN1Q8TCX5 695 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 FAM84BQ96KN1 310 aaPredicted RBP12.41□□□□□ -0.42
VPS53-202ENST00000389040 CD209Q9NNX6 404 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 A0A1B0GUL7 405 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 ECE2O60344 883 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 IGSF3O75054 1194 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 RPS12P25398 132 aaKnown RBP12.41□□□□□ -0.42
VPS53-202ENST00000389040 FKBP1AP62942 108 aaKnown RBP12.41□□□□□ -0.42
VPS53-202ENST00000389040 STRIP1Q5VSL9 837 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 SLC51AQ86UW1 340 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 LRRCC1Q9C099 1032 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 EXOC6BQ9Y2D4 811 aa12.41□□□□□ -0.42
VPS53-202ENST00000389040 TAF1P21675 1872 aa12.4□□□□□ -0.42
VPS53-202ENST00000389040 GSPT1P15170 499 aaKnown RBP12.4□□□□□ -0.42
VPS53-202ENST00000389040 TNNI3KQ59H18 835 aa12.4□□□□□ -0.42
VPS53-202ENST00000389040 CIAPIN1Q6FI81 312 aa12.4□□□□□ -0.42
VPS53-202ENST00000389040 TDRD7Q8NHU6 1098 aaKnown RBP12.4□□□□□ -0.42
VPS53-202ENST00000389040 ZNF512BQ96KM6 892 aaPredicted RBP12.4□□□□□ -0.42
VPS53-202ENST00000389040 FPGT-TNNI3KV9GXZ4 949 aa12.4□□□□□ -0.42
VPS53-202ENST00000389040 MYO3BQ8WXR4 1341 aa12.4□□□□□ -0.42
VPS53-202ENST00000389040 USP17L3A6NCW0 530 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 USP17L4A6NCW7 530 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 CDC45O75419 566 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 VIL1P09327 827 aaKnown RBP12.39□□□□□ -0.43
VPS53-202ENST00000389040 CXCL9Q07325 125 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 TTC22Q5TAA0 569 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 TBC1D9Q6ZT07 1266 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 USP17L1Q7RTZ2 530 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 TXNRD3Q86VQ6 643 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 L3MBTL3Q96JM7 780 aaPredicted RBP12.39□□□□□ -0.43
VPS53-202ENST00000389040 PDS5AQ29RF7 1337 aaKnown RBP12.39□□□□□ -0.43
VPS53-202ENST00000389040 WTIPA6NIX2 430 aaPredicted RBP12.39□□□□□ -0.43
VPS53-202ENST00000389040 APBB1O00213 710 aa12.39□□□□□ -0.43
VPS53-202ENST00000389040 ZNF609O15014 1411 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms