RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 EIF5BO60841 1220 aaKnown RBP22.55■■□□□ 1.2
CLN3-206ENST00000360019 UQCRFS1P1P0C7P4 283 aa22.55■■□□□ 1.2
CLN3-206ENST00000360019 KLRK1P26718 216 aa22.55■■□□□ 1.2
CLN3-206ENST00000360019 KCNJ4P48050 445 aa22.55■■□□□ 1.2
CLN3-206ENST00000360019 MASTLQ96GX5 879 aa22.55■■□□□ 1.2
CLN3-206ENST00000360019 RFX7Q2KHR2 1363 aa22.55■■□□□ 1.2
CLN3-206ENST00000360019 ZNF804BA4D1E1 1349 aa22.55■■□□□ 1.2
CLN3-206ENST00000360019 SGSM2O43147 1006 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 GYG1P46976 350 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 R3HDM1Q15032 1099 aaKnown RBP22.54■■□□□ 1.2
CLN3-206ENST00000360019 C2CD5Q86YS7 1000 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 ANKIB1Q9P2G1 1089 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 XDHP47989 1333 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 C10orf71Q711Q0 1435 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 LRRC37AA6NMS7 1700 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 HIP1O00291 1037 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 PPEF1O14829 653 aaPredicted RBP22.54■■□□□ 1.2
CLN3-206ENST00000360019 ZBTB7AO95365 584 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 RASGRF1Q13972 1273 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 FAM227BQ96M60 508 aa22.54■■□□□ 1.2
CLN3-206ENST00000360019 IRS2Q9Y4H2 1338 aa22.53■■□□□ 1.2
CLN3-206ENST00000360019 REC8O95072 547 aa22.53■■□□□ 1.2
CLN3-206ENST00000360019 GPSM2P81274 684 aa22.53■■□□□ 1.2
CLN3-206ENST00000360019 FAM84BQ96KN1 310 aaPredicted RBP22.53■■□□□ 1.2
CLN3-206ENST00000360019 HMG20BQ9P0W2 317 aa22.53■■□□□ 1.2
CLN3-206ENST00000360019 CHGBP05060 677 aa22.52■■□□□ 1.2
CLN3-206ENST00000360019 ALDH1B1P30837 517 aa22.52■■□□□ 1.2
CLN3-206ENST00000360019 NMIQ13287 307 aaPredicted RBP22.52■■□□□ 1.2
CLN3-206ENST00000360019 TMC4Q7Z404 712 aa22.52■■□□□ 1.2
CLN3-206ENST00000360019 USP26Q9BXU7 913 aa22.52■■□□□ 1.2
CLN3-206ENST00000360019 H0YIN7 160 aa22.52■■□□□ 1.2
CLN3-206ENST00000360019 CYP2E1P05181 493 aaPredicted RBP22.52■■□□□ 1.2
CLN3-206ENST00000360019 CHRNA5P30532 468 aa22.52■■□□□ 1.2
CLN3-206ENST00000360019 RBM25P49756 843 aaKnown RBP22.52■■□□□ 1.2
CLN3-206ENST00000360019 LEMD3Q9Y2U8 911 aa22.52■■□□□ 1.2
CLN3-206ENST00000360019 A0A0D9SFI3 127 aa22.51■■□□□ 1.19
CLN3-206ENST00000360019 CAVIN4Q5BKX8 364 aa22.51■■□□□ 1.19
CLN3-206ENST00000360019 SPATA5Q8NB90 893 aa22.51■■□□□ 1.19
CLN3-206ENST00000360019 NSFL1CQ9UNZ2 370 aaKnown RBP22.51■■□□□ 1.19
CLN3-206ENST00000360019 ATP6V0A2Q9Y487 856 aa22.51■■□□□ 1.19
CLN3-206ENST00000360019 ANP32AP39687 249 aaKnown RBP22.5■■□□□ 1.19
CLN3-206ENST00000360019 STYK1Q6J9G0 422 aa22.5■■□□□ 1.19
CLN3-206ENST00000360019 FBXO33Q7Z6M2 555 aa22.5■■□□□ 1.19
CLN3-206ENST00000360019 TXNRD3Q86VQ6 643 aa22.5■■□□□ 1.19
CLN3-206ENST00000360019 SP8Q8IXZ3 490 aa22.5■■□□□ 1.19
CLN3-206ENST00000360019 ZNF622Q969S3 477 aaKnown RBP eCLIP22.5■■□□□ 1.19
CLN3-206ENST00000360019 MTFR1LQ9H019 292 aa22.5■■□□□ 1.19
CLN3-206ENST00000360019 PODXL2Q9NZ53 605 aa22.5■■□□□ 1.19
CLN3-206ENST00000360019 LTBP1Q14766 1721 aa22.5■■□□□ 1.19
CLN3-206ENST00000360019 RUFY2Q8WXA3 655 aa22.5■■□□□ 1.19
CLN3-206ENST00000360019 ANO2Q9NQ90 1003 aa22.5■■□□□ 1.19
CLN3-206ENST00000360019 TICAM2Q86XR7 235 aa22.49■■□□□ 1.19
CLN3-206ENST00000360019 IQSEC3Q9UPP2 1182 aaPredicted RBP22.49■■□□□ 1.19
CLN3-206ENST00000360019 ATF5Q9Y2D1 282 aaPredicted RBP22.49■■□□□ 1.19
CLN3-206ENST00000360019 COL1A1P02452 1464 aaPredicted RBP22.48■■□□□ 1.19
CLN3-206ENST00000360019 SLFNL1Q499Z3 407 aa22.48■■□□□ 1.19
CLN3-206ENST00000360019 OLFM4Q6UX06 510 aa22.48■■□□□ 1.19
CLN3-206ENST00000360019 PIH1D3Q9NQM4 214 aaKnown RBP22.48■■□□□ 1.19
CLN3-206ENST00000360019 RAD50Q92878 1312 aa22.48■■□□□ 1.19
CLN3-206ENST00000360019 ATP2B4P23634 1241 aa22.47■■□□□ 1.19
CLN3-206ENST00000360019 VPS37DQ86XT2 251 aa22.47■■□□□ 1.19
CLN3-206ENST00000360019 GPR101Q96P66 508 aaPredicted RBP22.47■■□□□ 1.19
CLN3-206ENST00000360019 GNL3LQ9NVN8 582 aaKnown RBP22.47■■□□□ 1.19
CLN3-206ENST00000360019 MED23Q9ULK4 1368 aa22.47■■□□□ 1.19
CLN3-206ENST00000360019 UFL1O94874 794 aa22.47■■□□□ 1.19
CLN3-206ENST00000360019 HIBADHP31937 336 aaKnown RBP22.47■■□□□ 1.19
CLN3-206ENST00000360019 TTF1Q15361 905 aaPredicted RBP22.47■■□□□ 1.19
CLN3-206ENST00000360019 POLLQ9UGP5 575 aa22.47■■□□□ 1.19
CLN3-206ENST00000360019 GGA1Q9UJY5 639 aa22.47■■□□□ 1.19
CLN3-206ENST00000360019 CACNA1SQ13698 1873 aa22.47■■□□□ 1.19
CLN3-206ENST00000360019 PSDA5PKW4 1024 aaPredicted RBP22.46■■□□□ 1.19
CLN3-206ENST00000360019 PRPF40BQ6NWY9 871 aaKnown RBP22.46■■□□□ 1.19
CLN3-206ENST00000360019 C15orf52Q6ZUT6 534 aaKnown RBP22.46■■□□□ 1.19
CLN3-206ENST00000360019 TBC1D16Q8TBP0 767 aa22.46■■□□□ 1.19
CLN3-206ENST00000360019 LSG1Q9H089 658 aaKnown RBP22.46■■□□□ 1.19
CLN3-206ENST00000360019 RNF113AO15541 343 aaKnown RBP22.45■■□□□ 1.19
CLN3-206ENST00000360019 ZNF589Q86UQ0 364 aaPredicted RBP22.45■■□□□ 1.19
CLN3-206ENST00000360019 SEC62Q99442 399 aaKnown RBP22.45■■□□□ 1.19
CLN3-206ENST00000360019 ZMYM1Q5SVZ6 1142 aa22.45■■□□□ 1.18
CLN3-206ENST00000360019 SLX4Q8IY92 1834 aa22.45■■□□□ 1.18
CLN3-206ENST00000360019 KIF13BQ9NQT8 1826 aa22.45■■□□□ 1.18
CLN3-206ENST00000360019 MYO5AQ9Y4I1 1855 aaKnown RBP22.45■■□□□ 1.18
CLN3-206ENST00000360019 DUOX1Q9NRD9 1551 aa22.44■■□□□ 1.18
CLN3-206ENST00000360019 CNKSR1Q969H4 720 aa22.44■■□□□ 1.18
CLN3-206ENST00000360019 KIF2CQ99661 725 aa22.44■■□□□ 1.18
CLN3-206ENST00000360019 SEMA3EO15041 775 aa22.43■■□□□ 1.18
CLN3-206ENST00000360019 EPB41L2O43491 1005 aaKnown RBP22.43■■□□□ 1.18
CLN3-206ENST00000360019 POLD1P28340 1107 aa22.43■■□□□ 1.18
CLN3-206ENST00000360019 DOCK2Q92608 1830 aa22.43■■□□□ 1.18
CLN3-206ENST00000360019 DLEC1Q9Y238 1755 aa22.43■■□□□ 1.18
CLN3-206ENST00000360019 MYH7P12883 1935 aa22.43■■□□□ 1.18
CLN3-206ENST00000360019 IDH1O75874 414 aaKnown RBP22.43■■□□□ 1.18
CLN3-206ENST00000360019 ZFYP08048 801 aaPredicted RBP22.43■■□□□ 1.18
CLN3-206ENST00000360019 LRRFIP1Q32MZ4 808 aaKnown RBP22.43■■□□□ 1.18
CLN3-206ENST00000360019 MCMDC2Q4G0Z9 681 aa22.43■■□□□ 1.18
CLN3-206ENST00000360019 HELLSQ9NRZ9 838 aa22.43■■□□□ 1.18
CLN3-206ENST00000360019 DENND2AQ9ULE3 1009 aa22.43■■□□□ 1.18
CLN3-206ENST00000360019 ZBTB22O15209 634 aa22.42■■□□□ 1.18
CLN3-206ENST00000360019 PTH1RQ03431 593 aa22.42■■□□□ 1.18
CLN3-206ENST00000360019 KIAA1211Q6ZU35 1233 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms