RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 TNNI2P48788 182 aa20.52■□□□□ 0.88
COL18A1-202ENST00000355480 UVSSAQ2YD98 709 aa20.52■□□□□ 0.88
COL18A1-202ENST00000355480 RNF113AO15541 343 aaKnown RBP20.52■□□□□ 0.88
COL18A1-202ENST00000355480 CBX1P83916 185 aa20.52■□□□□ 0.88
COL18A1-202ENST00000355480 SSX2IPQ9Y2D8 614 aa20.52■□□□□ 0.88
COL18A1-202ENST00000355480 SPAG1Q07617 926 aa20.52■□□□□ 0.87
COL18A1-202ENST00000355480 TRIM75PA6NK02 468 aa20.51■□□□□ 0.87
COL18A1-202ENST00000355480 CWF19L2Q2TBE0 894 aaKnown RBP20.51■□□□□ 0.87
COL18A1-202ENST00000355480 MICALCLQ6ZW33 695 aa20.51■□□□□ 0.87
COL18A1-202ENST00000355480 DHX58Q96C10 678 aa20.51■□□□□ 0.87
COL18A1-202ENST00000355480 ECM2O94769 699 aaPredicted RBP20.51■□□□□ 0.87
COL18A1-202ENST00000355480 GRIPAP1Q4V328 841 aa20.51■□□□□ 0.87
COL18A1-202ENST00000355480 EYA3Q99504 573 aa20.51■□□□□ 0.87
COL18A1-202ENST00000355480 CALML3P27482 149 aa20.51■□□□□ 0.87
COL18A1-202ENST00000355480 KLHL40Q2TBA0 621 aa20.51■□□□□ 0.87
COL18A1-202ENST00000355480 ZSCAN23Q3MJ62 389 aa20.51■□□□□ 0.87
COL18A1-202ENST00000355480 KRT79Q5XKE5 535 aa20.51■□□□□ 0.87
COL18A1-202ENST00000355480 LDHBP07195 334 aaKnown RBP20.5■□□□□ 0.87
COL18A1-202ENST00000355480 GIGYF2Q6Y7W6 1299 aaKnown RBP20.5■□□□□ 0.87
COL18A1-202ENST00000355480 ANKRD2Q9GZV1 360 aa20.5■□□□□ 0.87
COL18A1-202ENST00000355480 FLT4P35916 1363 aa20.5■□□□□ 0.87
COL18A1-202ENST00000355480 PPP1R14CQ8TAE6 165 aa20.5■□□□□ 0.87
COL18A1-202ENST00000355480 BBXQ8WY36 941 aaPredicted RBP20.5■□□□□ 0.87
COL18A1-202ENST00000355480 FERP16591 822 aa20.5■□□□□ 0.87
COL18A1-202ENST00000355480 NCBP1Q09161 790 aaKnown RBP20.5■□□□□ 0.87
COL18A1-202ENST00000355480 ANO6Q4KMQ2 910 aa20.5■□□□□ 0.87
COL18A1-202ENST00000355480 NBPF14Q5TI25 921 aa20.5■□□□□ 0.87
COL18A1-202ENST00000355480 CEP135Q66GS9 1140 aa20.49■□□□□ 0.87
COL18A1-202ENST00000355480 LRRC45Q96CN5 670 aa20.49■□□□□ 0.87
COL18A1-202ENST00000355480 CHST3Q7LGC8 479 aa20.49■□□□□ 0.87
COL18A1-202ENST00000355480 JAG2Q9Y219 1238 aa20.49■□□□□ 0.87
COL18A1-202ENST00000355480 C16orf71Q8IYS4 520 aaPredicted RBP20.49■□□□□ 0.87
COL18A1-202ENST00000355480 FAM212AQ96EL1 285 aa20.49■□□□□ 0.87
COL18A1-202ENST00000355480 DCAF5Q96JK2 942 aa20.49■□□□□ 0.87
COL18A1-202ENST00000355480 PCDHB15Q9Y5E8 787 aa20.49■□□□□ 0.87
COL18A1-202ENST00000355480 PLCH2O75038 1416 aa20.49■□□□□ 0.87
COL18A1-202ENST00000355480 FAM13AO94988 1023 aa20.49■□□□□ 0.87
COL18A1-202ENST00000355480 TFCP2Q12800 502 aa20.49■□□□□ 0.87
COL18A1-202ENST00000355480 CEP112Q8N8E3 955 aa20.48■□□□□ 0.87
COL18A1-202ENST00000355480 C19orf44Q9H6X5 657 aa20.48■□□□□ 0.87
COL18A1-202ENST00000355480 POLKQ9UBT6 870 aa20.48■□□□□ 0.87
COL18A1-202ENST00000355480 KRT2P35908 639 aa20.48■□□□□ 0.87
COL18A1-202ENST00000355480 DPH6Q7L8W6 267 aa20.48■□□□□ 0.87
COL18A1-202ENST00000355480 ASXL1Q8IXJ9 1541 aa20.48■□□□□ 0.87
COL18A1-202ENST00000355480 TTC41PQ6P2S7 1318 aa20.48■□□□□ 0.87
COL18A1-202ENST00000355480 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.48■□□□□ 0.876e-7■■■■□ 20.8
COL18A1-202ENST00000355480 RRP9O43818 475 aaKnown RBP20.48■□□□□ 0.87
COL18A1-202ENST00000355480 USP48Q86UV5 1035 aa20.47■□□□□ 0.87
COL18A1-202ENST00000355480 DNAJC5BQ9UF47 199 aa20.47■□□□□ 0.87
COL18A1-202ENST00000355480 ZBTB21Q9ULJ3 1066 aa20.47■□□□□ 0.87
COL18A1-202ENST00000355480 MAP3K5Q99683 1374 aa20.47■□□□□ 0.87
COL18A1-202ENST00000355480 GJC1P36383 396 aa20.47■□□□□ 0.87
COL18A1-202ENST00000355480 DDX12PQ92771 950 aa20.47■□□□□ 0.87
COL18A1-202ENST00000355480 TTC12Q9H892 705 aaPredicted RBP20.47■□□□□ 0.87
COL18A1-202ENST00000355480 PTGS1P23219 599 aa20.47■□□□□ 0.87
COL18A1-202ENST00000355480 CKAP4Q07065 602 aaKnown RBP20.47■□□□□ 0.87
COL18A1-202ENST00000355480 CEP63Q96MT8 703 aa20.47■□□□□ 0.87
COL18A1-202ENST00000355480 RNF216Q9NWF9 866 aaPredicted RBP20.47■□□□□ 0.87
COL18A1-202ENST00000355480 DACT1Q9NYF0 836 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 MAP3K1Q13233 1512 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 SPTLC2O15270 562 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 ARID5AQ03989 594 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 TEX14Q8IWB6 1497 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 LRSAM1Q6UWE0 723 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 AOPEPQ8N6M6 819 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 URB2Q14146 1524 aaKnown RBP20.46■□□□□ 0.87
COL18A1-202ENST00000355480 GNPATO15228 680 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 SPECC1LQ69YQ0 1117 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 CCDC155Q8N6L0 562 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 A0A1W2PRG0 241 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 F13A1P00488 732 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 GCP02774 474 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 APOBRQ0VD83 1088 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 SELENOOQ9BVL4 669 aa20.46■□□□□ 0.87
COL18A1-202ENST00000355480 PCDH11XQ9BZA7 1347 aa20.45■□□□□ 0.86
COL18A1-202ENST00000355480 PCDH11YQ9BZA8 1340 aa20.45■□□□□ 0.86
COL18A1-202ENST00000355480 MCM7P33993 719 aa20.45■□□□□ 0.86
COL18A1-202ENST00000355480 DNM1Q05193 864 aaKnown RBP20.45■□□□□ 0.86
COL18A1-202ENST00000355480 HSF2BPO75031 334 aa20.45■□□□□ 0.86
COL18A1-202ENST00000355480 GNA11P29992 359 aa20.45■□□□□ 0.86
COL18A1-202ENST00000355480 RBM17Q96I25 401 aaKnown RBP20.45■□□□□ 0.86
COL18A1-202ENST00000355480 RTL1A6NKG5 1358 aa20.45■□□□□ 0.86
COL18A1-202ENST00000355480 PRPHP41219 470 aa20.45■□□□□ 0.86
COL18A1-202ENST00000355480 TRAPPC3LQ5T215 181 aa20.45■□□□□ 0.86
COL18A1-202ENST00000355480 EEF2P13639 858 aaKnown RBP20.44■□□□□ 0.86
COL18A1-202ENST00000355480 SP4Q02446 784 aa20.44■□□□□ 0.86
COL18A1-202ENST00000355480 HS2ST1Q7LGA3 356 aa20.44■□□□□ 0.86
COL18A1-202ENST00000355480 PPM1EQ8WY54 764 aa20.44■□□□□ 0.86
COL18A1-202ENST00000355480 A2MP01023 1474 aa20.44■□□□□ 0.86
COL18A1-202ENST00000355480 LMOD1P29536 600 aaPredicted RBP20.44■□□□□ 0.86
COL18A1-202ENST00000355480 MRPS9P82933 396 aaKnown RBP20.44■□□□□ 0.86
COL18A1-202ENST00000355480 AKNAD1Q5T1N1 836 aa20.44■□□□□ 0.86
COL18A1-202ENST00000355480 ZNF608Q9ULD9 1512 aaPredicted RBP20.43■□□□□ 0.86
COL18A1-202ENST00000355480 ARL1P40616 181 aaPredicted RBP20.43■□□□□ 0.86
COL18A1-202ENST00000355480 OTUD6BQ8N6M0 293 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 FAM107BQ9H098 131 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 DNAJC25Q9H1X3 360 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 RASAL2Q9UJF2 1139 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 CCDC171Q6TFL3 1326 aa20.43■□□□□ 0.86
COL18A1-202ENST00000355480 GPATCH8Q9UKJ3 1502 aaKnown RBP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms