RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ADD1P35611 737 aaKnown RBP3.13□□□□□ -1.91
VPS54-202ENST00000354504 SCNN1DP51172 638 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 LBRQ14739 615 aaKnown RBP3.13□□□□□ -1.91
VPS54-202ENST00000354504 NAA30Q147X3 362 aaPredicted RBP3.13□□□□□ -1.91
VPS54-202ENST00000354504 ERICH6BQ5W0A0 696 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 Q6ZVU0 165 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 SND1Q7KZF4 910 aaKnown RBP eCLIP3.13□□□□□ -1.91
VPS54-202ENST00000354504 WAPLQ7Z5K2 1190 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 ANKMY2Q8IV38 441 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 MYH7P12883 1935 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 DOT1LQ8TEK3 1739 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 ERVH48-1M5A8F1 160 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 CENPBP07199 599 aaPredicted RBP3.13□□□□□ -1.91
VPS54-202ENST00000354504 SLURP2P0DP57 97 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 IL13P35225 146 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 SLFNL1Q499Z3 407 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 MRS2Q9HD23 443 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 NUP98P52948 1817 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 CDK5RAP2Q96SN8 1893 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 HEG1Q9ULI3 1381 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 KCPQ6ZWJ8 1503 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 INTS6LQ5JSJ4 861 aaKnown RBP3.13□□□□□ -1.91
VPS54-202ENST00000354504 SEPT12Q8IYM1 358 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 PRAM1Q96QH2 718 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 SETDB2Q96T68 719 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 POLKQ9UBT6 870 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 TRAK1Q9UPV9 953 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 COL24A1Q17RW2 1714 aa3.13□□□□□ -1.91
VPS54-202ENST00000354504 ADH1CP00326 375 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 GPC1P35052 558 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 GTF2IP78347 998 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 CCDC102BQ68D86 513 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 ZBTB33Q86T24 672 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 DNMT3AQ9Y6K1 912 aaPredicted RBP3.12□□□□□ -1.91
VPS54-202ENST00000354504 ATP10DQ9P241 1426 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 C4AP0C0L4 1744 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 C4BP0C0L5 1744 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 AKAP11Q9UKA4 1901 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 THSD7AQ9UPZ6 1657 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 DCCP43146 1447 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 TTC24A2A3L6 582 aaPredicted RBP3.12□□□□□ -1.91
VPS54-202ENST00000354504 ESPNB1AK53 854 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 M0R2N6 131 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 FBLN1P23142 703 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 RRP1P56182 461 aaKnown RBP3.12□□□□□ -1.91
VPS54-202ENST00000354504 HNRNPUQ00839 825 aaKnown RBP eCLIP3.12□□□□□ -1.91
VPS54-202ENST00000354504 CC2D1BQ5T0F9 858 aaKnown RBP3.12□□□□□ -1.91
VPS54-202ENST00000354504 C1orf216Q8TAB5 229 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 OSBPL3Q9H4L5 887 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 TNNQ9UQP3 1299 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 SOS2Q07890 1332 aaPredicted RBP3.12□□□□□ -1.91
VPS54-202ENST00000354504 MYH14Q7Z406 1995 aaKnown RBP3.12□□□□□ -1.91
VPS54-202ENST00000354504 LRP5O75197 1615 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 WASLO00401 505 aaPredicted RBP3.12□□□□□ -1.91
VPS54-202ENST00000354504 ZBTB39O15060 712 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 ATP2B4P23634 1241 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 ARHGAP4P98171 946 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 DHX9Q08211 1270 aaKnown RBP3.12□□□□□ -1.91
VPS54-202ENST00000354504 AGERQ15109 404 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 MAP7D1Q3KQU3 841 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 TNS4Q8IZW8 715 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 ZNF784Q8NCA9 323 aaPredicted RBP3.12□□□□□ -1.91
VPS54-202ENST00000354504 DOLKQ9UPQ8 538 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 GNEQ9Y223 722 aaKnown RBP3.12□□□□□ -1.91
VPS54-202ENST00000354504 PCDHB11Q9Y5F2 797 aa3.12□□□□□ -1.91
VPS54-202ENST00000354504 CEBPAP49715 358 aaPredicted RBP3.11□□□□□ -1.91
VPS54-202ENST00000354504 EPHA4P54764 986 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 PTK2Q05397 1052 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 ZNF326Q5BKZ1 582 aaKnown RBP3.11□□□□□ -1.91
VPS54-202ENST00000354504 NBPF14Q5TI25 921 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 KANK3Q6NY19 840 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 TRIM46Q7Z4K8 759 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 CDK19Q9BWU1 502 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 CYLDQ9NQC7 956 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 CEMIPQ8WUJ3 1361 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 NCOA3Q9Y6Q9 1424 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 COL14A1Q05707 1796 aaKnown RBP3.11□□□□□ -1.91
VPS54-202ENST00000354504 A0A1W2PRU2 124 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 RNF225M0QZC1 329 aaPredicted RBP3.11□□□□□ -1.91
VPS54-202ENST00000354504 LILRA1O75019 489 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 RLBP1P12271 317 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 FSHRP23945 695 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 SIX5Q8N196 739 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 TSPAN10Q9H1Z9 355 aaPredicted RBP3.11□□□□□ -1.91
VPS54-202ENST00000354504 BRWD3Q6RI45 1802 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 LTBP1Q14766 1721 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 LOC100996750A0A140TA64 210 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 ARID5BQ14865 1188 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 SKAP1Q86WV1 359 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 FAM9BQ8IZU0 186 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 CLP1Q92989 425 aaKnown RBP3.11□□□□□ -1.91
VPS54-202ENST00000354504 KCTD15Q96SI1 283 aaPredicted RBP3.11□□□□□ -1.91
VPS54-202ENST00000354504 KRTAP4-6Q9BYQ5 205 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 ETNK1Q9HBU6 452 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 DNAAF2Q9NVR5 837 aaKnown RBP3.11□□□□□ -1.91
VPS54-202ENST00000354504 GMPR2Q9P2T1 348 aaKnown RBP3.11□□□□□ -1.91
VPS54-202ENST00000354504 LRFN2Q9ULH4 789 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 TBX22Q9Y458 520 aa3.11□□□□□ -1.91
VPS54-202ENST00000354504 OVOS2A0A0G2JMS6 1433 aa3.1□□□□□ -1.91
VPS54-202ENST00000354504 NPHP4O75161 1426 aaPredicted RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms