RNA–Protein interactions for RNA: ENST00000347662.8

TRAF3-201, Transcript of TNF receptor associated factor 3, humanhuman

TSL 5 BASIC

Gene TRAF3, Length 7,700 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-201ENST00000347662 CLIP2Q9UDT6 1046 aa13.39□□□□□ -0.27
TRAF3-201ENST00000347662 CCDC172P0C7W6 258 aa13.39□□□□□ -0.27
TRAF3-201ENST00000347662 HAND2P61296 217 aa13.39□□□□□ -0.27
TRAF3-201ENST00000347662 ZBTB9Q96C00 473 aa13.39□□□□□ -0.27
TRAF3-201ENST00000347662 ZBTB24O43167 697 aaPredicted RBP13.39□□□□□ -0.27
TRAF3-201ENST00000347662 FAM98CQ17RN3 349 aaKnown RBP13.39□□□□□ -0.27
TRAF3-201ENST00000347662 RNF216Q9NWF9 866 aaPredicted RBP13.39□□□□□ -0.27
TRAF3-201ENST00000347662 BIVM-ERCC5R4GMW8 1640 aa13.39□□□□□ -0.27
TRAF3-201ENST00000347662 OPA1O60313 960 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 UAP1Q16222 522 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-201ENST00000347662 RNF34Q969K3 372 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 SELENOOQ9BVL4 669 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 IMPG2Q9BZV3 1241 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 ZSCAN31Q96LW9 406 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-201ENST00000347662 SETD1BQ9UPS6 1966 aaKnown RBP13.38□□□□□ -0.27
TRAF3-201ENST00000347662 C20orf194Q5TEA3 1177 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 PPP1R21Q6ZMI0 780 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 SEC62Q99442 399 aaKnown RBP13.38□□□□□ -0.27
TRAF3-201ENST00000347662 CLSTN2Q9H4D0 955 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 GSDMBQ8TAX9 411 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 ATP2A1O14983 1001 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 PPFIA3O75145 1194 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 PRR16Q569H4 304 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 NSFL1CQ9UNZ2 370 aaKnown RBP13.38□□□□□ -0.27
TRAF3-201ENST00000347662 IFIT3O14879 490 aaKnown RBP13.38□□□□□ -0.27
TRAF3-201ENST00000347662 ZFYP08048 801 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-201ENST00000347662 TTF1Q15361 905 aaPredicted RBP13.38□□□□□ -0.27
TRAF3-201ENST00000347662 JAG2Q9Y219 1238 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 PARP3Q9Y6F1 533 aa13.38□□□□□ -0.27
TRAF3-201ENST00000347662 WDR46O15213 610 aaKnown RBP13.37□□□□□ -0.27
TRAF3-201ENST00000347662 DZIP3Q86Y13 1208 aaKnown RBP13.37□□□□□ -0.27
TRAF3-201ENST00000347662 PANK2Q9BZ23 570 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 ITSN2Q9NZM3 1697 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 KIF2AO00139 706 aaPredicted RBP13.37□□□□□ -0.27
TRAF3-201ENST00000347662 BIN1O00499 593 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 RIMBP2O15034 1052 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 BAG3O95817 575 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 TBC1D31Q96DN5 1066 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 EXOC1Q9NV70 894 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 SWAP70Q9UH65 585 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 GNPATO15228 680 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.37□□□□□ -0.27
TRAF3-201ENST00000347662 FAM13AO94988 1023 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 HSPA1LP34931 641 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 PPP2R5DQ14738 602 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 TMC6Q7Z403 805 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 SKAP1Q86WV1 359 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 VEZTQ9HBM0 779 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 KCNK9Q9NPC2 374 aa13.37□□□□□ -0.27
TRAF3-201ENST00000347662 PPANQ9NQ55 473 aaKnown RBP13.37□□□□□ -0.27
TRAF3-201ENST00000347662 TSPY2A6NKD2 308 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 GTF2A1P52655 376 aaPredicted RBP13.36□□□□□ -0.27
TRAF3-201ENST00000347662 CCDC25Q86WR0 208 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 CTTNBP2Q8WZ74 1663 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 ARID5AQ03989 594 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 ALDH1L2Q3SY69 923 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 CEP57Q86XR8 500 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 STX8Q9UNK0 236 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 ATRIPQ8WXE1 791 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 CCDC77Q9BR77 488 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 PPP1R12AO14974 1030 aaPredicted RBP13.36□□□□□ -0.27
TRAF3-201ENST00000347662 HLA-DOAP06340 250 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 NCAPGQ9BPX3 1015 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 DUOX2Q9NRD8 1548 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 ABCC11Q96J66 1382 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 GIPC1O14908 333 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 TRIM27P14373 513 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 PICALMQ13492 652 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 EIF4A2Q14240 407 aaKnown RBP13.36□□□□□ -0.27
TRAF3-201ENST00000347662 CCDC114Q96M63 670 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 RAB11FIP4Q86YS3 637 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 NUF2Q9BZD4 464 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 ZC3H12CQ9C0D7 883 aaKnown RBP13.36□□□□□ -0.27
TRAF3-201ENST00000347662 NACA2Q9H009 215 aa13.36□□□□□ -0.27
TRAF3-201ENST00000347662 XRCC6P12956 609 aaKnown RBP eCLIP13.35□□□□□ -0.27
TRAF3-201ENST00000347662 CCT2P78371 535 aaKnown RBP13.35□□□□□ -0.27
TRAF3-201ENST00000347662 POTEB2H3BUK9 544 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 LRRC43Q8N309 656 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 CCDC110Q8TBZ0 833 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 PSPC1Q8WXF1 523 aaKnown RBP13.35□□□□□ -0.27
TRAF3-201ENST00000347662 KIFC2Q96AC6 838 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 SPOUT1Q5T280 376 aaKnown RBP13.35□□□□□ -0.27
TRAF3-201ENST00000347662 USP37Q86T82 979 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 CCDC12Q8WUD4 166 aaPredicted RBP13.35□□□□□ -0.27
TRAF3-201ENST00000347662 KAT14Q9H8E8 782 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 UHRF1BP1Q6BDS2 1440 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 NUP153P49790 1475 aaKnown RBP13.35□□□□□ -0.27
TRAF3-201ENST00000347662 HELBQ8NG08 1087 aaPredicted RBP13.35□□□□□ -0.27
TRAF3-201ENST00000347662 C16orf45Q96MC5 204 aaPredicted RBP13.35□□□□□ -0.27
TRAF3-201ENST00000347662 LDHCP07864 332 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 SETDB1Q15047 1291 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 CASQ2O14958 399 aaPredicted RBP13.35□□□□□ -0.27
TRAF3-201ENST00000347662 FAM114A2Q9NRY5 505 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 STIM2Q9P246 746 aa13.35□□□□□ -0.27
TRAF3-201ENST00000347662 ZBTB21Q9ULJ3 1066 aa13.34□□□□□ -0.27
TRAF3-201ENST00000347662 FAM160A1Q05DH4 1040 aa13.34□□□□□ -0.27
TRAF3-201ENST00000347662 E7EVH7 732 aa13.34□□□□□ -0.27
TRAF3-201ENST00000347662 ATP2A2P16615 1042 aaKnown RBP13.34□□□□□ -0.27
TRAF3-201ENST00000347662 DDX27Q96GQ7 796 aaKnown RBP13.34□□□□□ -0.27
TRAF3-201ENST00000347662 TACC1O75410 805 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms