RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 RIMBP3Q9UFD9 1639 aa9.18□□□□□ -0.94
VMA21-201ENST00000330374 USP42Q9H9J4 1324 aaKnown RBP9.18□□□□□ -0.94
VMA21-201ENST00000330374 GRM8O00222 908 aa9.18□□□□□ -0.94
VMA21-201ENST00000330374 CDC25BP30305 580 aa9.18□□□□□ -0.94
VMA21-201ENST00000330374 FAM69CQ0P6D2 419 aa9.18□□□□□ -0.94
VMA21-201ENST00000330374 RBM26Q5T8P6 1007 aaKnown RBP9.18□□□□□ -0.94
VMA21-201ENST00000330374 MNS1Q8NEH6 495 aa9.18□□□□□ -0.94
VMA21-201ENST00000330374 GJB4Q9NTQ9 266 aa9.18□□□□□ -0.94
VMA21-201ENST00000330374 DBF4Q9UBU7 674 aaPredicted RBP9.18□□□□□ -0.94
VMA21-201ENST00000330374 MON2Q7Z3U7 1717 aa9.18□□□□□ -0.94
VMA21-201ENST00000330374 ZSCAN16Q9H4T2 348 aaPredicted RBP9.18□□□□□ -0.94
VMA21-201ENST00000330374 NRKQ7Z2Y5 1582 aa9.18□□□□□ -0.94
VMA21-201ENST00000330374 ERBB3P21860 1342 aa9.18□□□□□ -0.94
VMA21-201ENST00000330374 CCDC34Q96HJ3 373 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 ZCCHC17Q9NP64 241 aaKnown RBP9.17□□□□□ -0.94
VMA21-201ENST00000330374 NPHP4O75161 1426 aaPredicted RBP9.17□□□□□ -0.94
VMA21-201ENST00000330374 FAM160A1Q05DH4 1040 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 BMS1Q14692 1282 aaKnown RBP9.17□□□□□ -0.94
VMA21-201ENST00000330374 STK38Q15208 465 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 NBPF6Q5VWK0 638 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 ARMCX5Q6P1M9 558 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 SARM1Q6SZW1 724 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 UBXN4Q92575 508 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 NBPF4Q96M43 638 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 NAT10Q9H0A0 1025 aaKnown RBP9.17□□□□□ -0.94
VMA21-201ENST00000330374 SPDYE2BA6NHP3 402 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 SPDYE6P0CI01 402 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 NDUFA8P51970 172 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 SPDYE2Q495Y8 402 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 CYB5RLQ6IPT4 315 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 KSR2Q6VAB6 950 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 NBPF11Q86T75 865 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 STK11IPQ8N1F8 1099 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 KAZALD1Q96I82 304 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 NEUROD6Q96NK8 337 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 GPHNQ9NQX3 736 aaPredicted RBP9.17□□□□□ -0.94
VMA21-201ENST00000330374 AMOTL2Q9Y2J4 779 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 USP31Q70CQ4 1352 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 STOX1Q6ZVD7 989 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 PCDHA7Q9UN72 937 aa9.17□□□□□ -0.94
VMA21-201ENST00000330374 NEO1Q92859 1461 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 CTAGE5O15320 804 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 LTKP29376 864 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 ADD1P35611 737 aaKnown RBP9.16□□□□□ -0.94
VMA21-201ENST00000330374 TFCP2Q12800 502 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 EPHA10Q5JZY3 1008 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 NSUN7Q8NE18 718 aaKnown RBP9.16□□□□□ -0.94
VMA21-201ENST00000330374 CAVIN2O95810 425 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 ATP1A3P13637 1013 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 HNRNPH2P55795 449 aaKnown RBP9.16□□□□□ -0.94
VMA21-201ENST00000330374 ZNF396Q96N95 335 aaPredicted RBP9.16□□□□□ -0.94
VMA21-201ENST00000330374 ZSWIM4Q9H7M6 989 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 HMG20BQ9P0W2 317 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 FAM208AQ9UK61 1670 aaKnown RBP9.16□□□□□ -0.94
VMA21-201ENST00000330374 GYS2P54840 703 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 SLC39A6Q13433 755 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 KRT32Q14532 448 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 TMCO3Q6UWJ1 677 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 DBNDD2Q9BQY9 259 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 CARD6Q9BX69 1037 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 RCOR1Q9UKL0 485 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.16□□□□□ -0.94
VMA21-201ENST00000330374 COL15A1P39059 1388 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 NRDCO43847 1150 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 CTDNEP1O95476 244 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 PNMA6AP0CW24 399 aaPredicted RBP9.16□□□□□ -0.94
VMA21-201ENST00000330374 GSDMDP57764 484 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 HAND2P61296 217 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 MRPS27Q92552 414 aaKnown RBP9.16□□□□□ -0.94
VMA21-201ENST00000330374 CHMP4AQ9BY43 222 aa9.16□□□□□ -0.94
VMA21-201ENST00000330374 DBNLQ9UJU6 430 aaKnown RBP9.16□□□□□ -0.94
VMA21-201ENST00000330374 MARCKSP29966 332 aaPredicted RBP9.15□□□□□ -0.94
VMA21-201ENST00000330374 MYD88Q99836 296 aa9.15□□□□□ -0.94
VMA21-201ENST00000330374 UTP14AQ9BVJ6 771 aaKnown RBP9.15□□□□□ -0.94
VMA21-201ENST00000330374 CLIC4Q9Y696 253 aa9.15□□□□□ -0.94
VMA21-201ENST00000330374 PDILTQ8N807 584 aa9.15□□□□□ -0.94
VMA21-201ENST00000330374 CALCOCO1Q9P1Z2 691 aa9.15□□□□□ -0.94
VMA21-201ENST00000330374 FHOD1Q9Y613 1164 aa9.15□□□□□ -0.94
VMA21-201ENST00000330374 GOLIM4O00461 696 aa9.15□□□□□ -0.95
VMA21-201ENST00000330374 SERPINC1P01008 464 aa9.15□□□□□ -0.95
VMA21-201ENST00000330374 TEX35Q5T0J7 233 aa9.15□□□□□ -0.95
VMA21-201ENST00000330374 CEBPAP49715 358 aaPredicted RBP9.14□□□□□ -0.95
VMA21-201ENST00000330374 MTX1Q13505 466 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 CFAP100Q494V2 611 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 C1orf141Q5JVX7 400 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 TRIM34Q9BYJ4 488 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 PXDNLA1KZ92 1463 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 MED23Q9ULK4 1368 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 ATP5J2-PTCD1G3V325 749 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 PTCD1O75127 700 aaKnown RBP9.14□□□□□ -0.95
VMA21-201ENST00000330374 SLC3A2P08195 630 aaKnown RBP9.14□□□□□ -0.95
VMA21-201ENST00000330374 ABL2P42684 1182 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 TTLL5Q6EMB2 1281 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 ALDH1L1O75891 902 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 PLA2G4AP47712 749 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 ENGASEQ8NFI3 743 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 AKAP12Q02952 1782 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 G3V3G9 751 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 TPM4P67936 248 aa9.14□□□□□ -0.95
VMA21-201ENST00000330374 ST5P78524 1137 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms