RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 PARP10Q53GL7 1025 aa15.61■□□□□ 0.09
CPNE1-201ENST00000317677 RUFY2Q8WXA3 655 aa15.61■□□□□ 0.09
CPNE1-201ENST00000317677 TNPO1Q92973 898 aaKnown RBP15.61■□□□□ 0.09
CPNE1-201ENST00000317677 SNX14Q9Y5W7 946 aa15.61■□□□□ 0.09
CPNE1-201ENST00000317677 ARAP2Q8WZ64 1704 aa15.61■□□□□ 0.09
CPNE1-201ENST00000317677 AKAP11Q9UKA4 1901 aa15.61■□□□□ 0.09
CPNE1-201ENST00000317677 MCCP23508 829 aa15.6■□□□□ 0.09
CPNE1-201ENST00000317677 RAB3GAP1Q15042 981 aa15.6■□□□□ 0.09
CPNE1-201ENST00000317677 RC3H1Q5TC82 1133 aaKnown RBP15.6■□□□□ 0.09
CPNE1-201ENST00000317677 DDX46Q7L014 1031 aaKnown RBP15.6■□□□□ 0.09
CPNE1-201ENST00000317677 ZNF589Q86UQ0 364 aaPredicted RBP15.6■□□□□ 0.09
CPNE1-201ENST00000317677 SPON1Q9HCB6 807 aa15.6■□□□□ 0.09
CPNE1-201ENST00000317677 RFX7Q2KHR2 1363 aa15.6■□□□□ 0.09
CPNE1-201ENST00000317677 CCDC171Q6TFL3 1326 aa15.6■□□□□ 0.09
CPNE1-201ENST00000317677 LDHAL6AQ6ZMR3 332 aa15.6■□□□□ 0.09
CPNE1-201ENST00000317677 XAGE2Q96GT9 111 aa15.6■□□□□ 0.09
CPNE1-201ENST00000317677 CCNL1Q9UK58 526 aaPredicted RBP15.6■□□□□ 0.09
CPNE1-201ENST00000317677 TAF1P21675 1872 aa15.59■□□□□ 0.09
CPNE1-201ENST00000317677 HIP1O00291 1037 aa15.59■□□□□ 0.09
CPNE1-201ENST00000317677 RPS6KA4O75676 772 aa15.59■□□□□ 0.09
CPNE1-201ENST00000317677 HMGB2P26583 209 aaKnown RBP15.59■□□□□ 0.09
CPNE1-201ENST00000317677 NEK4P51957 841 aa15.59■□□□□ 0.09
CPNE1-201ENST00000317677 SLFNL1Q499Z3 407 aa15.59■□□□□ 0.09
CPNE1-201ENST00000317677 AK7Q96M32 723 aa15.59■□□□□ 0.09
CPNE1-201ENST00000317677 SEC31BQ9NQW1 1179 aa15.59■□□□□ 0.09
CPNE1-201ENST00000317677 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.59■□□□□ 0.09
CPNE1-201ENST00000317677 SRP68Q9UHB9 627 aaKnown RBP15.59■□□□□ 0.09
CPNE1-201ENST00000317677 A0A1B0GUL6 1792 aa15.59■□□□□ 0.09
CPNE1-201ENST00000317677 ZNF445P59923 1031 aa15.58■□□□□ 0.09
CPNE1-201ENST00000317677 SCARF1Q14162 830 aa15.58■□□□□ 0.09
CPNE1-201ENST00000317677 CLEC4GQ6UXB4 293 aa15.58■□□□□ 0.09
CPNE1-201ENST00000317677 KCNB2Q92953 911 aa15.58■□□□□ 0.09
CPNE1-201ENST00000317677 SEC62Q99442 399 aaKnown RBP15.58■□□□□ 0.09
CPNE1-201ENST00000317677 UPF3BQ9BZI7 483 aaKnown RBP15.58■□□□□ 0.09
CPNE1-201ENST00000317677 ST18O60284 1047 aa15.58■□□□□ 0.08
CPNE1-201ENST00000317677 NECTIN1Q15223 517 aa15.58■□□□□ 0.08
CPNE1-201ENST00000317677 METTL24Q5JXM2 366 aa15.58■□□□□ 0.08
CPNE1-201ENST00000317677 C3orf67Q6ZVT6 689 aa15.58■□□□□ 0.08
CPNE1-201ENST00000317677 KBTBD3Q8NAB2 608 aa15.58■□□□□ 0.08
CPNE1-201ENST00000317677 TMEM51Q9NW97 253 aa15.58■□□□□ 0.08
CPNE1-201ENST00000317677 ZKSCAN5Q9Y2L8 839 aa15.58■□□□□ 0.08
CPNE1-201ENST00000317677 GOLIM4O00461 696 aa15.57■□□□□ 0.08
CPNE1-201ENST00000317677 GNPATO15228 680 aa15.57■□□□□ 0.08
CPNE1-201ENST00000317677 KLHL40Q2TBA0 621 aa15.57■□□□□ 0.08
CPNE1-201ENST00000317677 TBC1D9BQ66K14 1250 aa15.57■□□□□ 0.08
CPNE1-201ENST00000317677 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.57■□□□□ 0.08
CPNE1-201ENST00000317677 MAP4K1Q92918 833 aa15.57■□□□□ 0.08
CPNE1-201ENST00000317677 PAG1Q9NWQ8 432 aa15.57■□□□□ 0.08
CPNE1-201ENST00000317677 PPP1R1BQ9UD71 204 aaPredicted RBP15.57■□□□□ 0.08
CPNE1-201ENST00000317677 AKAP2Q9Y2D5 859 aa15.57■□□□□ 0.08
CPNE1-201ENST00000317677 ZNF652Q9Y2D9 606 aa15.57■□□□□ 0.08
CPNE1-201ENST00000317677 MYO5AQ9Y4I1 1855 aaKnown RBP15.57■□□□□ 0.08
CPNE1-201ENST00000317677 IFIT1P09914 478 aaKnown RBP15.56■□□□□ 0.08
CPNE1-201ENST00000317677 ATP2B3Q16720 1220 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 ERFEQ4G0M1 354 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 USPL1Q5W0Q7 1092 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 CNNM1Q9NRU3 951 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 LRRC4BQ9NT99 713 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 NARFQ9UHQ1 456 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 RBM8AQ9Y5S9 174 aaKnown RBP15.56■□□□□ 0.08
CPNE1-201ENST00000317677 RTL9Q8NET4 1388 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 COL9A3Q14050 684 aaPredicted RBP15.56■□□□□ 0.08
CPNE1-201ENST00000317677 PRPF40BQ6NWY9 871 aaKnown RBP15.56■□□□□ 0.08
CPNE1-201ENST00000317677 CCDC129Q6ZRS4 1044 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 PRDM10Q9NQV6 1147 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 TAF6LQ9Y6J9 622 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 ABCC12Q96J65 1359 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 UBR3Q6ZT12 1888 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 MYH7P12883 1935 aa15.56■□□□□ 0.08
CPNE1-201ENST00000317677 TAF5LO75529 589 aa15.55■□□□□ 0.08
CPNE1-201ENST00000317677 ADCK5Q3MIX3 580 aa15.55■□□□□ 0.08
CPNE1-201ENST00000317677 TTC14Q96N46 770 aa15.55■□□□□ 0.08
CPNE1-201ENST00000317677 RGL2O15211 777 aa15.55■□□□□ 0.08
CPNE1-201ENST00000317677 PDE8BO95263 885 aa15.55■□□□□ 0.08
CPNE1-201ENST00000317677 FGFR2P21802 821 aa15.55■□□□□ 0.08
CPNE1-201ENST00000317677 PI16Q6UXB8 463 aa15.55■□□□□ 0.08
CPNE1-201ENST00000317677 ZGPATQ8N5A5 531 aaKnown RBP15.55■□□□□ 0.08
CPNE1-201ENST00000317677 HELBQ8NG08 1087 aaPredicted RBP15.55■□□□□ 0.08
CPNE1-201ENST00000317677 TMX3Q96JJ7 454 aa15.55■□□□□ 0.08
CPNE1-201ENST00000317677 CPA1P15085 419 aa15.54■□□□□ 0.08
CPNE1-201ENST00000317677 TTC39AQ5SRH9 613 aa15.54■□□□□ 0.08
CPNE1-201ENST00000317677 BICDL1Q6ZP65 573 aa15.54■□□□□ 0.08
CPNE1-201ENST00000317677 ARHGEF1Q92888 912 aaKnown RBP15.54■□□□□ 0.08
CPNE1-201ENST00000317677 QSER1Q2KHR3 1735 aa15.54■□□□□ 0.08
CPNE1-201ENST00000317677 SNAP23O00161 211 aa15.53■□□□□ 0.08
CPNE1-201ENST00000317677 CREB3L3Q68CJ9 461 aa15.53■□□□□ 0.08
CPNE1-201ENST00000317677 MYRIPQ8NFW9 859 aa15.53■□□□□ 0.08
CPNE1-201ENST00000317677 TNRC6CQ9HCJ0 1690 aaKnown RBP15.53■□□□□ 0.08
CPNE1-201ENST00000317677 SLC27A2O14975 620 aa15.53■□□□□ 0.08
CPNE1-201ENST00000317677 ZBTB7AO95365 584 aa15.53■□□□□ 0.08
CPNE1-201ENST00000317677 GTF2F1P35269 517 aaKnown RBP eCLIP15.53■□□□□ 0.081e-9■■■■□ 19.4
CPNE1-201ENST00000317677 CCDC152Q4G0S7 254 aa15.53■□□□□ 0.08
CPNE1-201ENST00000317677 CCDC158Q5M9N0 1113 aa15.53■□□□□ 0.08
CPNE1-201ENST00000317677 RPAP1Q9BWH6 1393 aaPredicted RBP15.52■□□□□ 0.08
CPNE1-201ENST00000317677 GOLGA6L22H0YM25 854 aa15.52■□□□□ 0.07
CPNE1-201ENST00000317677 MCAMP43121 646 aa15.52■□□□□ 0.07
CPNE1-201ENST00000317677 ZAP70P43403 619 aa15.52■□□□□ 0.07
CPNE1-201ENST00000317677 CUL4AQ13619 759 aa15.52■□□□□ 0.07
CPNE1-201ENST00000317677 ZMYM1Q5SVZ6 1142 aa15.52■□□□□ 0.07
CPNE1-201ENST00000317677 NOL8Q76FK4 1167 aaKnown RBP15.52■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms