RNA–Protein interactions for RNA: ENST00000309660.9

PTPN2-201, Transcript of protein tyrosine phosphatase, non-receptor type 2, humanhuman

TSL 1 (best) BASIC

Gene PTPN2, Length 3,467 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN2-201ENST00000309660 HMGB1P09429 215 aaKnown RBP13.61□□□□□ -0.23
PTPN2-201ENST00000309660 DNTTIP2Q5QJE6 756 aaKnown RBP13.61□□□□□ -0.23
PTPN2-201ENST00000309660 SPC24Q8NBT2 197 aa13.61□□□□□ -0.23
PTPN2-201ENST00000309660 PUS7LQ9H0K6 701 aaKnown RBP13.61□□□□□ -0.23
PTPN2-201ENST00000309660 PKD1L3Q7Z443 1732 aa13.61□□□□□ -0.23
PTPN2-201ENST00000309660 ANKRD18BA2A2Z9 1011 aa13.61□□□□□ -0.23
PTPN2-201ENST00000309660 NLRP10Q86W26 655 aa13.61□□□□□ -0.23
PTPN2-201ENST00000309660 CCDC192P0DO97 292 aa13.6□□□□□ -0.23
PTPN2-201ENST00000309660 MAP3K11Q16584 847 aa13.6□□□□□ -0.23
PTPN2-201ENST00000309660 DZIP3Q86Y13 1208 aaKnown RBP13.6□□□□□ -0.23
PTPN2-201ENST00000309660 SLC4A9Q96Q91 983 aa13.6□□□□□ -0.23
PTPN2-201ENST00000309660 KCPQ6ZWJ8 1503 aa13.6□□□□□ -0.23
PTPN2-201ENST00000309660 PALLDQ8WX93 1383 aa13.6□□□□□ -0.23
PTPN2-201ENST00000309660 IMMTQ16891 758 aaKnown RBP13.6□□□□□ -0.23
PTPN2-201ENST00000309660 OTUD7BQ6GQQ9 843 aa13.6□□□□□ -0.23
PTPN2-201ENST00000309660 RALYLQ86SE5 291 aaKnown RBP13.6□□□□□ -0.23
PTPN2-201ENST00000309660 TTC12Q9H892 705 aaPredicted RBP13.6□□□□□ -0.23
PTPN2-201ENST00000309660 LRRFIP1Q32MZ4 808 aaKnown RBP13.6□□□□□ -0.23
PTPN2-201ENST00000309660 STK11IPQ8N1F8 1099 aa13.6□□□□□ -0.23
PTPN2-201ENST00000309660 TTLL11Q8NHH1 800 aa13.6□□□□□ -0.23
PTPN2-201ENST00000309660 FBXW7Q969H0 707 aa13.6□□□□□ -0.23
PTPN2-201ENST00000309660 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.6□□□□□ -0.23
PTPN2-201ENST00000309660 JCADQ9P266 1359 aa13.6□□□□□ -0.23
PTPN2-201ENST00000309660 FGAP02671 866 aa13.59□□□□□ -0.23
PTPN2-201ENST00000309660 SLC9C2Q5TAH2 1124 aa13.59□□□□□ -0.23
PTPN2-201ENST00000309660 NSUN7Q8NE18 718 aaKnown RBP13.59□□□□□ -0.23
PTPN2-201ENST00000309660 DNAJC5Q9H3Z4 198 aa13.59□□□□□ -0.23
PTPN2-201ENST00000309660 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.59□□□□□ -0.23
PTPN2-201ENST00000309660 GPAA1O43292 621 aa13.59□□□□□ -0.23
PTPN2-201ENST00000309660 NR1I2O75469 434 aa13.59□□□□□ -0.23
PTPN2-201ENST00000309660 NUTM2BA6NNL0 878 aaPredicted RBP13.58□□□□□ -0.24
PTPN2-201ENST00000309660 NUTM2EB1AL46 878 aaPredicted RBP13.58□□□□□ -0.24
PTPN2-201ENST00000309660 PFKFB2O60825 505 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 MCAMP43121 646 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 CTSWP56202 376 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 HS1BP3Q53T59 392 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 NUTM2AQ8IVF1 878 aaPredicted RBP13.58□□□□□ -0.24
PTPN2-201ENST00000309660 ALDH8A1Q9H2A2 487 aaPredicted RBP13.58□□□□□ -0.24
PTPN2-201ENST00000309660 RFX7Q2KHR2 1363 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 CPLX1O14810 134 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 CYP19A1P11511 503 aaPredicted RBP13.58□□□□□ -0.24
PTPN2-201ENST00000309660 LUZP1Q86V48 1076 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 C17orf53Q8N3J3 647 aaPredicted RBP13.58□□□□□ -0.24
PTPN2-201ENST00000309660 GOLGA8BA8MQT2 603 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 ZNF213O14771 459 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 CTDNEP1O95476 244 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 RXRAP19793 462 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 PDIA3P30101 505 aaKnown RBP13.58□□□□□ -0.24
PTPN2-201ENST00000309660 RESTQ13127 1097 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 PGBD1Q96JS3 809 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 CTNNA3Q9UI47 895 aa13.58□□□□□ -0.24
PTPN2-201ENST00000309660 KLF18A0A0U1RQI7 1052 aa13.57□□□□□ -0.24
PTPN2-201ENST00000309660 KDM4FA0A1W2PPD8 638 aa13.57□□□□□ -0.24
PTPN2-201ENST00000309660 PRC1O43663 620 aa13.57□□□□□ -0.24
PTPN2-201ENST00000309660 APPBP2Q92624 585 aa13.57□□□□□ -0.24
PTPN2-201ENST00000309660 KIF3AQ9Y496 699 aa13.57□□□□□ -0.24
PTPN2-201ENST00000309660 PHKA1P46020 1223 aa13.57□□□□□ -0.24
PTPN2-201ENST00000309660 TYRO3Q06418 890 aa13.57□□□□□ -0.24
PTPN2-201ENST00000309660 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.57□□□□□ -0.24
PTPN2-201ENST00000309660 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.57□□□□□ -0.24
PTPN2-201ENST00000309660 GJB4Q9NTQ9 266 aa13.57□□□□□ -0.24
PTPN2-201ENST00000309660 DENND2AQ9ULE3 1009 aa13.57□□□□□ -0.24
PTPN2-201ENST00000309660 GLI3P10071 1580 aa13.57□□□□□ -0.24
PTPN2-201ENST00000309660 PARP4Q9UKK3 1724 aaKnown RBP13.57□□□□□ -0.24
PTPN2-201ENST00000309660 POLR3DP05423 398 aaPredicted RBP13.56□□□□□ -0.24
PTPN2-201ENST00000309660 PDIA4P13667 645 aaKnown RBP13.56□□□□□ -0.24
PTPN2-201ENST00000309660 ME1P48163 572 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 KIAA2012Q0VF49 1180 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 TRIM28Q13263 835 aaKnown RBP13.56□□□□□ -0.24
PTPN2-201ENST00000309660 ANO6Q4KMQ2 910 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 CCDC144CPQ8IYA2 1237 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 CFAP45Q9UL16 551 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 CSF1RP07333 972 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 EXOSC10Q01780 885 aaKnown RBP13.56□□□□□ -0.24
PTPN2-201ENST00000309660 TRDNQ13061 729 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 UVSSAQ2YD98 709 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 SASS6Q6UVJ0 657 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 DRC7Q8IY82 874 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 VSIG10Q8N0Z9 540 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 ZFYP08048 801 aaPredicted RBP13.56□□□□□ -0.24
PTPN2-201ENST00000309660 HMGN5P82970 282 aaKnown RBP13.56□□□□□ -0.24
PTPN2-201ENST00000309660 TOMM22Q9NS69 142 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 IQSEC3Q9UPP2 1182 aaPredicted RBP13.56□□□□□ -0.24
PTPN2-201ENST00000309660 RIPOR2Q9Y4F9 1068 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 ABCC6O95255 1503 aa13.56□□□□□ -0.24
PTPN2-201ENST00000309660 TNS2Q63HR2 1409 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 PLEKHG2Q9H7P9 1386 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 A0A087WWV3 80 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 OFD1O75665 1012 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 ERCC4Q92889 916 aaPredicted RBP13.55□□□□□ -0.24
PTPN2-201ENST00000309660 MPHOSPH8Q99549 860 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 ATP6V1AP38606 617 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 USP28Q96RU2 1077 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 ZSCAN16Q9H4T2 348 aaPredicted RBP13.55□□□□□ -0.24
PTPN2-201ENST00000309660 LAMB4A4D0S4 1761 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 ELP1O95163 1332 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 MCM5P33992 734 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 FUCA2Q9BTY2 467 aa13.55□□□□□ -0.24
PTPN2-201ENST00000309660 PIH1D3Q9NQM4 214 aaKnown RBP13.55□□□□□ -0.24
PTPN2-201ENST00000309660 AP5Z1O43299 807 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms