RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 KSR2Q6VAB6 950 aa15.23■□□□□ 0.03
SNX1-201ENST00000261889 AIFM3Q96NN9 605 aa15.23■□□□□ 0.03
SNX1-201ENST00000261889 SMTNL1A8MU46 457 aa15.23■□□□□ 0.03
SNX1-201ENST00000261889 UBE2Q2LH0YL09 131 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 KINO60870 393 aaKnown RBP15.22■□□□□ 0.03
SNX1-201ENST00000261889 ATP1A3P13637 1013 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 SPECC1Q5M775 1068 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 ZSWIM4Q9H7M6 989 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 IFNKQ9P0W0 207 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 CTDNEP1O95476 244 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 PDCP20941 246 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 IQCB1Q15051 598 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 DDX19AQ9NUU7 478 aaKnown RBP15.22■□□□□ 0.03
SNX1-201ENST00000261889 TOM1O60784 492 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 CCDC73Q6ZRK6 1079 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 HOMER1Q86YM7 354 aa15.22■□□□□ 0.03
SNX1-201ENST00000261889 ADAMTS7Q9UKP4 1686 aa15.21■□□□□ 0.03
SNX1-201ENST00000261889 SF3A1Q15459 793 aaKnown RBP15.21■□□□□ 0.03
SNX1-201ENST00000261889 NFATC2IPQ8NCF5 419 aa15.21■□□□□ 0.03
SNX1-201ENST00000261889 AXIN2Q9Y2T1 843 aa15.21■□□□□ 0.03
SNX1-201ENST00000261889 SHANK3Q9BYB0 1731 aa15.21■□□□□ 0.03
SNX1-201ENST00000261889 FKBP4Q02790 459 aaKnown RBP eCLIP15.21■□□□□ 0.03
SNX1-201ENST00000261889 PI16Q6UXB8 463 aa15.21■□□□□ 0.03
SNX1-201ENST00000261889 TDRD7Q8NHU6 1098 aaKnown RBP15.21■□□□□ 0.03
SNX1-201ENST00000261889 CLIC4Q9Y696 253 aa15.21■□□□□ 0.03
SNX1-201ENST00000261889 SEC31AO94979 1220 aaKnown RBP15.21■□□□□ 0.02
SNX1-201ENST00000261889 NDUFA8P51970 172 aa15.21■□□□□ 0.02
SNX1-201ENST00000261889 GYS2P54840 703 aa15.21■□□□□ 0.02
SNX1-201ENST00000261889 DHX40Q8IX18 779 aaKnown RBP15.21■□□□□ 0.02
SNX1-201ENST00000261889 KIF18AQ8NI77 898 aa15.21■□□□□ 0.02
SNX1-201ENST00000261889 PKD1L3Q7Z443 1732 aa15.2■□□□□ 0.02
SNX1-201ENST00000261889 ARHGEF25Q86VW2 580 aa15.2■□□□□ 0.02
SNX1-201ENST00000261889 XPO4Q9C0E2 1151 aaKnown RBP15.2■□□□□ 0.02
SNX1-201ENST00000261889 CCAR2Q8N163 923 aaKnown RBP15.2■□□□□ 0.02
SNX1-201ENST00000261889 TM6SF1Q9BZW5 370 aa15.19■□□□□ 0.02
SNX1-201ENST00000261889 RNMTO43148 476 aaKnown RBP15.19■□□□□ 0.02
SNX1-201ENST00000261889 CCZ1BP86790 482 aa15.19■□□□□ 0.02
SNX1-201ENST00000261889 CCZ1P86791 482 aaPredicted RBP15.19■□□□□ 0.02
SNX1-201ENST00000261889 CCDC82Q8N4S0 544 aa15.19■□□□□ 0.02
SNX1-201ENST00000261889 ZCCHC17Q9NP64 241 aaKnown RBP15.19■□□□□ 0.02
SNX1-201ENST00000261889 ATP2B1P20020 1258 aa15.19■□□□□ 0.02
SNX1-201ENST00000261889 RBM6P78332 1123 aaKnown RBP15.19■□□□□ 0.02
SNX1-201ENST00000261889 KCNH5Q8NCM2 988 aa15.19■□□□□ 0.02
SNX1-201ENST00000261889 NSUN7Q8NE18 718 aaKnown RBP15.19■□□□□ 0.02
SNX1-201ENST00000261889 BBXQ8WY36 941 aaPredicted RBP15.19■□□□□ 0.02
SNX1-201ENST00000261889 ZNF446Q9NWS9 450 aa15.19■□□□□ 0.02
SNX1-201ENST00000261889 SNW1Q13573 536 aaKnown RBP15.18■□□□□ 0.02
SNX1-201ENST00000261889 ILDR1Q86SU0 546 aaPredicted RBP15.18■□□□□ 0.02
SNX1-201ENST00000261889 PLEKHG2Q9H7P9 1386 aa15.18■□□□□ 0.02
SNX1-201ENST00000261889 ZNF609O15014 1411 aa15.18■□□□□ 0.02
SNX1-201ENST00000261889 ADD1P35611 737 aaKnown RBP15.18■□□□□ 0.02
SNX1-201ENST00000261889 ZRSR1Q15695 479 aaKnown RBP15.18■□□□□ 0.02
SNX1-201ENST00000261889 NKX2-3Q8TAU0 364 aa15.18■□□□□ 0.02
SNX1-201ENST00000261889 OGFRQ9NZT2 677 aa15.18■□□□□ 0.02
SNX1-201ENST00000261889 PCDHA7Q9UN72 937 aa15.18■□□□□ 0.02
SNX1-201ENST00000261889 GCP02774 474 aa15.18■□□□□ 0.02
SNX1-201ENST00000261889 UTP14CQ5TAP6 766 aaKnown RBP15.18■□□□□ 0.02
SNX1-201ENST00000261889 LMBR1LQ6UX01 489 aa15.18■□□□□ 0.02
SNX1-201ENST00000261889 CABLES1Q8TDN4 633 aa15.18■□□□□ 0.02
SNX1-201ENST00000261889 CHMP4CQ96CF2 233 aa15.18■□□□□ 0.02
SNX1-201ENST00000261889 DNAI1Q9UI46 699 aa15.18■□□□□ 0.02
SNX1-201ENST00000261889 A0A087WZG4 1122 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 DPF2Q92785 391 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 CCDC34Q96HJ3 373 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 GTPBP4Q9BZE4 634 aaKnown RBP15.17■□□□□ 0.02
SNX1-201ENST00000261889 INCENPQ9NQS7 918 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 NLRP2Q9NX02 1062 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 DDX41Q9UJV9 622 aaKnown RBP15.17■□□□□ 0.02
SNX1-201ENST00000261889 LRRC37A3O60309 1634 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 SLFN14P0C7P3 912 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 STX1AQ16623 288 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 TNNI3KQ59H18 835 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 NBPF11Q86T75 865 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 FPGT-TNNI3KV9GXZ4 949 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 ERBB3P21860 1342 aa15.17■□□□□ 0.02
SNX1-201ENST00000261889 COBLO75128 1261 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 WASHC4Q2M389 1173 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 LINS1Q8NG48 757 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 ZNF496Q96IT1 587 aaPredicted RBP15.16■□□□□ 0.02
SNX1-201ENST00000261889 MYL10Q9BUA6 226 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 TUBGCP6Q96RT7 1819 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 STK38Q15208 465 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 E4F1Q66K89 784 aaPredicted RBP15.16■□□□□ 0.02
SNX1-201ENST00000261889 ARMCX5Q6P1M9 558 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 ERC1Q8IUD2 1116 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 IL17RAQ96F46 866 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 NEURL1BA8MQ27 555 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 TFRCP02786 760 aaKnown RBP15.16■□□□□ 0.02
SNX1-201ENST00000261889 LRRC24Q50LG9 513 aa15.16■□□□□ 0.02
SNX1-201ENST00000261889 PUS3Q9BZE2 481 aaKnown RBP15.16■□□□□ 0.02
SNX1-201ENST00000261889 TMEM232C9JQI7 657 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 TPM3P06753 285 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 GNL2Q13823 731 aaKnown RBP15.15■□□□□ 0.02
SNX1-201ENST00000261889 SKIDA1Q1XH10 827 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 PLCD3Q8N3E9 789 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 ELP1O95163 1332 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 LRP6O75581 1613 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 HTATSF1O43719 755 aaKnown RBP15.15■□□□□ 0.02
SNX1-201ENST00000261889 ANKRD1Q15327 319 aa15.15■□□□□ 0.02
SNX1-201ENST00000261889 CHRNA2Q15822 529 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms