RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 BICC1Q9H694 974 aaKnown RBP21.68■■□□□ 1.06
PTPRE-201ENST00000254667 KRT24Q2M2I5 525 aa21.68■■□□□ 1.06
PTPRE-201ENST00000254667 TAOK3Q9H2K8 898 aa21.68■■□□□ 1.06
PTPRE-201ENST00000254667 IFI16Q16666 785 aaKnown RBP21.67■■□□□ 1.06
PTPRE-201ENST00000254667 RRAGBQ5VZM2 374 aa21.67■■□□□ 1.06
PTPRE-201ENST00000254667 LIG1P18858 919 aa21.67■■□□□ 1.06
PTPRE-201ENST00000254667 F8W031 263 aaPredicted RBP21.67■■□□□ 1.06
PTPRE-201ENST00000254667 PPFIA3O75145 1194 aa21.67■■□□□ 1.06
PTPRE-201ENST00000254667 PICALMQ13492 652 aa21.67■■□□□ 1.06
PTPRE-201ENST00000254667 INTS4Q96HW7 963 aaKnown RBP21.67■■□□□ 1.06
PTPRE-201ENST00000254667 MAGEB6Q8N7X4 407 aa21.66■■□□□ 1.06
PTPRE-201ENST00000254667 METTL22Q9BUU2 404 aaPredicted RBP21.66■■□□□ 1.06
PTPRE-201ENST00000254667 BTG4Q9NY30 223 aa21.66■■□□□ 1.06
PTPRE-201ENST00000254667 DENND2AQ9ULE3 1009 aa21.66■■□□□ 1.06
PTPRE-201ENST00000254667 NSFL1CQ9UNZ2 370 aaKnown RBP21.66■■□□□ 1.06
PTPRE-201ENST00000254667 LDHBP07195 334 aaKnown RBP21.66■■□□□ 1.06
PTPRE-201ENST00000254667 RRP36Q96EU6 259 aaKnown RBP21.66■■□□□ 1.06
PTPRE-201ENST00000254667 MCM9Q9NXL9 1143 aa21.66■■□□□ 1.06
PTPRE-201ENST00000254667 TFCP2L1Q9NZI6 479 aa21.66■■□□□ 1.06
PTPRE-201ENST00000254667 CHMLP26374 656 aa21.66■■□□□ 1.06
PTPRE-201ENST00000254667 CNPY2Q9Y2B0 182 aa21.66■■□□□ 1.06
PTPRE-201ENST00000254667 SMARCC2Q8TAQ2 1214 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 FERMT2Q96AC1 680 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 CCDC91Q7Z6B0 441 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 C8orf34Q49A92 452 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 USP48Q86UV5 1035 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 GSTTP1A0A1W2PQM5 241 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 B4DLN1 442 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 PSMA7O14818 248 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 MRPL12P52815 198 aaKnown RBP21.65■■□□□ 1.06
PTPRE-201ENST00000254667 TAF3Q5VWG9 929 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 FAM200AQ8TCP9 573 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 EYA2O00167 538 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 USP8P40818 1118 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 HSPA2P54652 639 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 GIMAP6Q6P9H5 292 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 BRAPQ7Z569 592 aa21.65■■□□□ 1.06
PTPRE-201ENST00000254667 RBM17Q96I25 401 aaKnown RBP21.65■■□□□ 1.06
PTPRE-201ENST00000254667 TRMT1Q9NXH9 659 aaKnown RBP21.65■■□□□ 1.06
PTPRE-201ENST00000254667 LMTK3Q96Q04 1460 aa21.64■■□□□ 1.06
PTPRE-201ENST00000254667 ZBTB7BO15156 539 aaPredicted RBP21.64■■□□□ 1.06
PTPRE-201ENST00000254667 CGNQ9P2M7 1197 aaKnown RBP21.64■■□□□ 1.06
PTPRE-201ENST00000254667 SPTLC2O15270 562 aa21.64■■□□□ 1.05
PTPRE-201ENST00000254667 SNW1Q13573 536 aaKnown RBP21.64■■□□□ 1.05
PTPRE-201ENST00000254667 TRAPPC3LQ5T215 181 aa21.64■■□□□ 1.05
PTPRE-201ENST00000254667 RUFY3Q7L099 469 aa21.64■■□□□ 1.05
PTPRE-201ENST00000254667 AOX1Q06278 1338 aa21.64■■□□□ 1.05
PTPRE-201ENST00000254667 HCLS1P14317 486 aaPredicted RBP21.64■■□□□ 1.05
PTPRE-201ENST00000254667 UBASH3AP57075 661 aa21.64■■□□□ 1.05
PTPRE-201ENST00000254667 PAXIP1Q6ZW49 1069 aaPredicted RBP21.64■■□□□ 1.05
PTPRE-201ENST00000254667 HOOK3Q86VS8 718 aa21.64■■□□□ 1.05
PTPRE-201ENST00000254667 RBM28Q9NW13 759 aaKnown RBP21.64■■□□□ 1.05
PTPRE-201ENST00000254667 ARHGEF10O15013 1369 aa21.63■■□□□ 1.05
PTPRE-201ENST00000254667 GNA11P29992 359 aa21.63■■□□□ 1.05
PTPRE-201ENST00000254667 KRT2P35908 639 aa21.63■■□□□ 1.05
PTPRE-201ENST00000254667 TNNQ9UQP3 1299 aa21.63■■□□□ 1.05
PTPRE-201ENST00000254667 CHL1O00533 1208 aa21.63■■□□□ 1.05
PTPRE-201ENST00000254667 POLD1P28340 1107 aa21.63■■□□□ 1.05
PTPRE-201ENST00000254667 AK2P54819 239 aa21.63■■□□□ 1.05
PTPRE-201ENST00000254667 SH3TC1Q8TE82 1336 aa21.63■■□□□ 1.05
PTPRE-201ENST00000254667 IFFO1Q0D2I5 559 aa21.63■■□□□ 1.05
PTPRE-201ENST00000254667 BICD1Q96G01 975 aa21.63■■□□□ 1.05
PTPRE-201ENST00000254667 ATL3Q6DD88 541 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 ISM2Q6H9L7 571 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 HELBQ8NG08 1087 aaPredicted RBP21.62■■□□□ 1.05
PTPRE-201ENST00000254667 CTNNBL1Q8WYA6 563 aaPredicted RBP21.62■■□□□ 1.05
PTPRE-201ENST00000254667 C16orf45Q96MC5 204 aaPredicted RBP21.62■■□□□ 1.05
PTPRE-201ENST00000254667 TMCO5BA8MYB1 307 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 GCOM1H8Y6P7 765 aaPredicted RBP21.62■■□□□ 1.05
PTPRE-201ENST00000254667 MYZAPP0CAP1 466 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 CTNNA2P26232 953 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 AFMP43652 599 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 TTC6Q86TZ1 520 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 TBC1D5Q92609 795 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 NBPF14Q5TI25 921 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 DYDC1Q8WWB3 177 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 INSRP06213 1382 aa21.62■■□□□ 1.05
PTPRE-201ENST00000254667 AKR1B10O60218 316 aa21.61■■□□□ 1.05
PTPRE-201ENST00000254667 SPDYE3A6NKU9 549 aa21.61■■□□□ 1.05
PTPRE-201ENST00000254667 CYLC1P35663 651 aaPredicted RBP21.61■■□□□ 1.05
PTPRE-201ENST00000254667 JDP2Q8WYK2 163 aa21.61■■□□□ 1.05
PTPRE-201ENST00000254667 NAP1L4Q99733 375 aaKnown RBP21.61■■□□□ 1.05
PTPRE-201ENST00000254667 KRT13P13646 458 aa21.61■■□□□ 1.05
PTPRE-201ENST00000254667 KRT79Q5XKE5 535 aa21.61■■□□□ 1.05
PTPRE-201ENST00000254667 DACT1Q9NYF0 836 aa21.61■■□□□ 1.05
PTPRE-201ENST00000254667 NOP2P46087 812 aaKnown RBP21.61■■□□□ 1.05
PTPRE-201ENST00000254667 NEO1Q92859 1461 aa21.61■■□□□ 1.05
PTPRE-201ENST00000254667 MIGA1Q8NAN2 632 aa21.6■■□□□ 1.05
PTPRE-201ENST00000254667 SPAG5Q96R06 1193 aa21.6■■□□□ 1.05
PTPRE-201ENST00000254667 GNPATO15228 680 aa21.6■■□□□ 1.05
PTPRE-201ENST00000254667 RRP9O43818 475 aaKnown RBP21.6■■□□□ 1.05
PTPRE-201ENST00000254667 SHTN1A0MZ66 631 aa21.6■■□□□ 1.05
PTPRE-201ENST00000254667 DNM1Q05193 864 aaKnown RBP21.6■■□□□ 1.05
PTPRE-201ENST00000254667 ANO6Q4KMQ2 910 aa21.6■■□□□ 1.05
PTPRE-201ENST00000254667 SLC52A2Q9HAB3 445 aa21.6■■□□□ 1.05
PTPRE-201ENST00000254667 NF2P35240 595 aa21.6■■□□□ 1.05
PTPRE-201ENST00000254667 ASIC1P78348 528 aa21.6■■□□□ 1.05
PTPRE-201ENST00000254667 PUM3Q15397 648 aaKnown RBP21.6■■□□□ 1.05
PTPRE-201ENST00000254667 RTL1A6NKG5 1358 aa21.6■■□□□ 1.05
PTPRE-201ENST00000254667 PBRM1Q86U86 1689 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms