RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 H7C1W4 665 aa25.03■■□□□ 1.6
TRIM28-201ENST00000253024 NAA30Q147X3 362 aaPredicted RBP25.03■■□□□ 1.6
TRIM28-201ENST00000253024 AIFM3Q96NN9 605 aa25.03■■□□□ 1.6
TRIM28-201ENST00000253024 PTPN21Q16825 1174 aa25.03■■□□□ 1.6
TRIM28-201ENST00000253024 FSIP1Q8NA03 581 aa25.03■■□□□ 1.6
TRIM28-201ENST00000253024 PUS7LQ9H0K6 701 aaKnown RBP25.03■■□□□ 1.6
TRIM28-201ENST00000253024 CLIP2Q9UDT6 1046 aa25.03■■□□□ 1.6
TRIM28-201ENST00000253024 RIOK3O14730 519 aaKnown RBP25.02■■□□□ 1.6
TRIM28-201ENST00000253024 PDIA3P30101 505 aaKnown RBP25.02■■□□□ 1.6
TRIM28-201ENST00000253024 ASAP1Q9ULH1 1129 aa25.02■■□□□ 1.6
TRIM28-201ENST00000253024 GOLGA6L19H0YKK7 550 aa25.02■■□□□ 1.6
TRIM28-201ENST00000253024 DYNC1I1O14576 645 aa25.02■■□□□ 1.6
TRIM28-201ENST00000253024 MYRIPQ8NFW9 859 aa25.02■■□□□ 1.6
TRIM28-201ENST00000253024 XAGE2Q96GT9 111 aa25.02■■□□□ 1.6
TRIM28-201ENST00000253024 DDX19AQ9NUU7 478 aaKnown RBP25.02■■□□□ 1.6
TRIM28-201ENST00000253024 CRYBG1Q9Y4K1 1723 aa25.02■■□□□ 1.6
TRIM28-201ENST00000253024 RNF113AO15541 343 aaKnown RBP25.01■■□□□ 1.59
TRIM28-201ENST00000253024 SPDYE4A6NLX3 237 aa25.01■■□□□ 1.59
TRIM28-201ENST00000253024 EVA1CP58658 441 aa25.01■■□□□ 1.59
TRIM28-201ENST00000253024 ZNF710Q8N1W2 664 aa25.01■■□□□ 1.59
TRIM28-201ENST00000253024 TRMT1Q9NXH9 659 aaKnown RBP25.01■■□□□ 1.59
TRIM28-201ENST00000253024 ELP1O95163 1332 aa25■■□□□ 1.59
TRIM28-201ENST00000253024 BECN2A8MW95 431 aa25■■□□□ 1.59
TRIM28-201ENST00000253024 IL15P40933 162 aaPredicted RBP25■■□□□ 1.59
TRIM28-201ENST00000253024 SF3A1Q15459 793 aaKnown RBP25■■□□□ 1.59
TRIM28-201ENST00000253024 DNAJC10Q8IXB1 793 aa25■■□□□ 1.59
TRIM28-201ENST00000253024 KLF18A0A0U1RQI7 1052 aa25■■□□□ 1.59
TRIM28-201ENST00000253024 GOLGA6L6A8MZA4 724 aa25■■□□□ 1.59
TRIM28-201ENST00000253024 PFKFB2O60825 505 aa25■■□□□ 1.59
TRIM28-201ENST00000253024 TSGA10IPQ3SY00 556 aa25■■□□□ 1.59
TRIM28-201ENST00000253024 ZMYM1Q5SVZ6 1142 aa25■■□□□ 1.59
TRIM28-201ENST00000253024 SDF4Q9BRK5 362 aa25■■□□□ 1.59
TRIM28-201ENST00000253024 SLIT3O75094 1523 aa25■■□□□ 1.59
TRIM28-201ENST00000253024 ADD1P35611 737 aaKnown RBP24.99■■□□□ 1.59
TRIM28-201ENST00000253024 ZNF75DP51815 510 aa24.99■■□□□ 1.59
TRIM28-201ENST00000253024 CCDC73Q6ZRK6 1079 aa24.99■■□□□ 1.59
TRIM28-201ENST00000253024 GOLGA8BA8MQT2 603 aa24.99■■□□□ 1.59
TRIM28-201ENST00000253024 UBE2Q2LH0YL09 131 aa24.99■■□□□ 1.59
TRIM28-201ENST00000253024 IDH1O75874 414 aaKnown RBP24.99■■□□□ 1.59
TRIM28-201ENST00000253024 CACTINQ8WUQ7 758 aaKnown RBP24.99■■□□□ 1.59
TRIM28-201ENST00000253024 MYL10Q9BUA6 226 aa24.99■■□□□ 1.59
TRIM28-201ENST00000253024 CFAP45Q9UL16 551 aa24.99■■□□□ 1.59
TRIM28-201ENST00000253024 FGAP02671 866 aa24.99■■□□□ 1.59
TRIM28-201ENST00000253024 CBX1P83916 185 aa24.99■■□□□ 1.59
TRIM28-201ENST00000253024 CLIC4Q9Y696 253 aa24.99■■□□□ 1.59
TRIM28-201ENST00000253024 KINO60870 393 aaKnown RBP24.98■■□□□ 1.59
TRIM28-201ENST00000253024 MARCKSP29966 332 aaPredicted RBP24.98■■□□□ 1.59
TRIM28-201ENST00000253024 ILDR1Q86SU0 546 aaPredicted RBP24.98■■□□□ 1.59
TRIM28-201ENST00000253024 CCDC82Q8N4S0 544 aa24.98■■□□□ 1.59
TRIM28-201ENST00000253024 FDPSP14324 419 aaKnown RBP24.97■■□□□ 1.59
TRIM28-201ENST00000253024 CCDC158Q5M9N0 1113 aa24.97■■□□□ 1.59
TRIM28-201ENST00000253024 NOL12Q9UGY1 213 aaKnown RBP eCLIP24.97■■□□□ 1.593e-7■□□□□ 8
TRIM28-201ENST00000253024 V9GYY5 206 aaPredicted RBP24.97■■□□□ 1.59
TRIM28-201ENST00000253024 BCL2L12Q9HB09 334 aa24.97■■□□□ 1.59
TRIM28-201ENST00000253024 KIF3AQ9Y496 699 aa24.97■■□□□ 1.59
TRIM28-201ENST00000253024 PRC1O43663 620 aa24.96■■□□□ 1.59
TRIM28-201ENST00000253024 HLFQ16534 295 aa24.96■■□□□ 1.59
TRIM28-201ENST00000253024 AOPEPQ8N6M6 819 aa24.96■■□□□ 1.59
TRIM28-201ENST00000253024 CPLX1O14810 134 aa24.96■■□□□ 1.59
TRIM28-201ENST00000253024 PKNOX2Q96KN3 472 aa24.96■■□□□ 1.59
TRIM28-201ENST00000253024 USP27XA6NNY8 438 aa24.96■■□□□ 1.59
TRIM28-201ENST00000253024 METTL24Q5JXM2 366 aa24.96■■□□□ 1.59
TRIM28-201ENST00000253024 ZSCAN25Q6NSZ9 544 aa24.96■■□□□ 1.59
TRIM28-201ENST00000253024 SENP2Q9HC62 589 aa24.96■■□□□ 1.59
TRIM28-201ENST00000253024 NPHP1O15259 732 aa24.95■■□□□ 1.58
TRIM28-201ENST00000253024 EXOSC10Q01780 885 aaKnown RBP24.95■■□□□ 1.58
TRIM28-201ENST00000253024 HSP90AA4PQ58FG1 418 aa24.95■■□□□ 1.58
TRIM28-201ENST00000253024 TERF1P54274 439 aa24.95■■□□□ 1.58
TRIM28-201ENST00000253024 SMARCC2Q8TAQ2 1214 aa24.95■■□□□ 1.58
TRIM28-201ENST00000253024 CHAF1AQ13111 956 aaPredicted RBP24.94■■□□□ 1.58
TRIM28-201ENST00000253024 TPD52L1Q16890 204 aaPredicted RBP24.94■■□□□ 1.58
TRIM28-201ENST00000253024 PHKBQ93100 1093 aa24.94■■□□□ 1.58
TRIM28-201ENST00000253024 HELLSQ9NRZ9 838 aa24.94■■□□□ 1.58
TRIM28-201ENST00000253024 PCDHA7Q9UN72 937 aa24.94■■□□□ 1.58
TRIM28-201ENST00000253024 SH3TC1Q8TE82 1336 aa24.94■■□□□ 1.58
TRIM28-201ENST00000253024 FOXP2O15409 715 aa24.94■■□□□ 1.58
TRIM28-201ENST00000253024 STK38Q15208 465 aa24.94■■□□□ 1.58
TRIM28-201ENST00000253024 LDHAL6AQ6ZMR3 332 aa24.94■■□□□ 1.58
TRIM28-201ENST00000253024 ZSCAN16Q9H4T2 348 aaPredicted RBP24.94■■□□□ 1.58
TRIM28-201ENST00000253024 ORC3Q9UBD5 711 aaPredicted RBP24.94■■□□□ 1.58
TRIM28-201ENST00000253024 TBC1D2BQ9UPU7 963 aa24.94■■□□□ 1.58
TRIM28-201ENST00000253024 AFDNP55196 1824 aaKnown RBP24.94■■□□□ 1.58
TRIM28-201ENST00000253024 IGSF3O75054 1194 aa24.93■■□□□ 1.58
TRIM28-201ENST00000253024 NDUFA8P51970 172 aa24.93■■□□□ 1.58
TRIM28-201ENST00000253024 GREM2Q9H772 168 aa24.93■■□□□ 1.58
TRIM28-201ENST00000253024 USP54Q70EL1 1684 aa24.93■■□□□ 1.58
TRIM28-201ENST00000253024 OVOS2A0A0G2JMS6 1433 aa24.93■■□□□ 1.58
TRIM28-201ENST00000253024 RALYLQ86SE5 291 aaKnown RBP24.93■■□□□ 1.58
TRIM28-201ENST00000253024 C8orf76Q96K31 380 aa24.93■■□□□ 1.58
TRIM28-201ENST00000253024 CNNM1Q9NRU3 951 aa24.93■■□□□ 1.58
TRIM28-201ENST00000253024 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP24.93■■□□□ 1.58
TRIM28-201ENST00000253024 MICU3Q86XE3 530 aa24.93■■□□□ 1.58
TRIM28-201ENST00000253024 CARMIL3Q8ND23 1372 aa24.93■■□□□ 1.58
TRIM28-201ENST00000253024 PALLDQ8WX93 1383 aa24.93■■□□□ 1.58
TRIM28-201ENST00000253024 IFIT5Q13325 482 aaKnown RBP24.92■■□□□ 1.58
TRIM28-201ENST00000253024 SNW1Q13573 536 aaKnown RBP24.92■■□□□ 1.58
TRIM28-201ENST00000253024 DSCC1Q9BVC3 393 aa24.92■■□□□ 1.58
TRIM28-201ENST00000253024 SPTLC3Q9NUV7 552 aa24.92■■□□□ 1.58
TRIM28-201ENST00000253024 GPAA1O43292 621 aa24.92■■□□□ 1.58
TRIM28-201ENST00000253024 PPP4R3BQ5MIZ7 849 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms