RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 RPS23P62266 143 aaKnown RBP16.62■□□□□ 0.25
USP39-218ENST00000493829 TRAM1Q15629 374 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 ZNF718Q3SXZ3 478 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 ZMAT1Q5H9K5 638 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 DMRTC1Q5HYR2 192 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 FBXW12Q6X9E4 464 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 SLC16A12Q6ZSM3 486 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 PLPP7Q8NBV4 271 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 SEMA6DQ8NFY4 1073 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 ADAT3Q96EY9 351 aaPredicted RBP16.62■□□□□ 0.25
USP39-218ENST00000493829 DERL3Q96Q80 235 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 CENPOQ9BU64 300 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 NOX4Q9NPH5 578 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 SSR3Q9UNL2 185 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 V9GYS6 101 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 A6NNC1 897 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 E7EQL1 145 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 GNALP38405 381 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 PSG7Q13046 419 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 ACBD4Q8NC06 268 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 PPIL3Q9H2H8 161 aaKnown RBP16.62■□□□□ 0.25
USP39-218ENST00000493829 OPA3Q9H6K4 179 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 PPP1R3EQ9H7J1 279 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 ZNF275Q9NSD4 429 aaPredicted RBP16.62■□□□□ 0.25
USP39-218ENST00000493829 MYEF2Q9P2K5 600 aaKnown RBP16.62■□□□□ 0.25
USP39-218ENST00000493829 ENPP5Q9UJA9 477 aa16.62■□□□□ 0.25
USP39-218ENST00000493829 GCN1Q92616 2671 aaKnown RBP16.61■□□□□ 0.25
USP39-218ENST00000493829 CD300LBA8K4G0 201 aa16.61■□□□□ 0.25
USP39-218ENST00000493829 TIMM8AO60220 97 aaPredicted RBP16.61■□□□□ 0.25
USP39-218ENST00000493829 COX6B1P14854 86 aa16.61■□□□□ 0.25
USP39-218ENST00000493829 TTKP33981 857 aa16.61■□□□□ 0.25
USP39-218ENST00000493829 MAP2K3P46734 347 aa16.61■□□□□ 0.25
USP39-218ENST00000493829 OR8B8Q15620 311 aa16.61■□□□□ 0.25
USP39-218ENST00000493829 CD200R1LQ6Q8B3 271 aa16.61■□□□□ 0.25
USP39-218ENST00000493829 LILRB1Q8NHL6 650 aaPredicted RBP16.61■□□□□ 0.25
USP39-218ENST00000493829 SYNPRQ8TBG9 265 aa16.61■□□□□ 0.25
USP39-218ENST00000493829 DVL3Q92997 716 aaPredicted RBP16.61■□□□□ 0.25
USP39-218ENST00000493829 SPOCK3Q9BQ16 436 aa16.61■□□□□ 0.25
USP39-218ENST00000493829 MRPL37Q9BZE1 423 aaKnown RBP16.61■□□□□ 0.25
USP39-218ENST00000493829 TXNL4BQ9NX01 149 aaKnown RBP16.61■□□□□ 0.25
USP39-218ENST00000493829 TAS2R4Q9NYW5 299 aa16.61■□□□□ 0.25
USP39-218ENST00000493829 CMAHPQ9Y471 501 aa16.61■□□□□ 0.25
USP39-218ENST00000493829 HELZ2Q9BYK8 2649 aaKnown RBP16.61■□□□□ 0.25
USP39-218ENST00000493829 TRDV1A0A1B0GX56 115 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 A0A1W2PPW3 197 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 SC5DO75845 299 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 CD2P06729 351 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 OR4A8P0C604 315 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 RAC2P15153 192 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 CALRP27797 417 aaKnown RBP16.6■□□□□ 0.25
USP39-218ENST00000493829 KLF3P57682 345 aaPredicted RBP16.6■□□□□ 0.25
USP39-218ENST00000493829 NCS1P62166 190 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 RIPPLY1Q0D2K3 151 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 ADIPOQQ15848 244 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 TIMM50Q3ZCQ8 353 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 MBNL2Q5VZF2 373 aaKnown RBP16.6■□□□□ 0.25
USP39-218ENST00000493829 SP5Q6BEB4 398 aaPredicted RBP16.6■□□□□ 0.25
USP39-218ENST00000493829 ANKRD13BQ86YJ7 626 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 TMEM204Q9BSN7 226 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 PAPOLGQ9BWT3 736 aaKnown RBP16.6■□□□□ 0.25
USP39-218ENST00000493829 KCNN3Q9UGI6 736 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 PURGQ9UJV8 347 aaKnown RBP16.6■□□□□ 0.25
USP39-218ENST00000493829 RHBDD3Q9Y3P4 386 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 CEPT1Q9Y6K0 416 aa16.6■□□□□ 0.25
USP39-218ENST00000493829 A0A1W2PPR1 153 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 LOC390937A0A1W2PQ73 354 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 PIN1P1O15428 100 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 NOL3O60936 208 aaKnown RBP16.59■□□□□ 0.25
USP39-218ENST00000493829 GABARAPO95166 117 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 ZNF12P17014 697 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 MAPK3P27361 379 aaPredicted RBP16.59■□□□□ 0.25
USP39-218ENST00000493829 VBP1P61758 197 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 ZNF672Q499Z4 452 aaPredicted RBP16.59■□□□□ 0.25
USP39-218ENST00000493829 NPRL2Q8WTW4 380 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 GTF3AQ92664 365 aaKnown RBP16.59■□□□□ 0.25
USP39-218ENST00000493829 HAVCR1Q96D42 359 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 GPR173Q9NS66 373 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 CISD1Q9NZ45 108 aaKnown RBP16.59■□□□□ 0.25
USP39-218ENST00000493829 GPR160Q9UJ42 338 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 HRNRQ86YZ3 2850 aaPredicted RBP16.59■□□□□ 0.25
USP39-218ENST00000493829 TRAV8-7A0A075B6U6 113 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 TRBV5-7A0A0A0MS05 114 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 SMIM30A4D0T7 59 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 DAZAP2Q15038 168 aaPredicted RBP16.59■□□□□ 0.25
USP39-218ENST00000493829 HSD17B12Q53GQ0 312 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 ASPHD2Q6ICH7 369 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 C1orf174Q8IYL3 243 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 OR13C9Q8NGT0 318 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 PIGCQ92535 297 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 MRPL24Q96A35 216 aaKnown RBP16.59■□□□□ 0.25
USP39-218ENST00000493829 ZNF442Q9H7R0 627 aa16.59■□□□□ 0.25
USP39-218ENST00000493829 GATBO75879 557 aaKnown RBP16.58■□□□□ 0.24
USP39-218ENST00000493829 ZNF250P15622 560 aa16.58■□□□□ 0.24
USP39-218ENST00000493829 TUBG1P23258 451 aa16.58■□□□□ 0.24
USP39-218ENST00000493829 CTF1Q16619 201 aa16.58■□□□□ 0.24
USP39-218ENST00000493829 CEP78Q5JTW2 689 aa16.58■□□□□ 0.24
USP39-218ENST00000493829 ISOC1Q96CN7 298 aa16.58■□□□□ 0.24
USP39-218ENST00000493829 RBM38Q9H0Z9 239 aaKnown RBP16.58■□□□□ 0.24
USP39-218ENST00000493829 PLK3Q9H4B4 646 aa16.58■□□□□ 0.24
USP39-218ENST00000493829 TUBG2Q9NRH3 451 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms