RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 OLIG1Q8TAK6 271 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 ZNF486Q96H40 463 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-201ENST00000359947 DEFB108AA8MXU0 73 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 IGLV3-25P01717 112 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 ELK1P19419 428 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 PPP1CAP62136 330 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 C17orf107Q6ZR85 190 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 TSEN54Q7Z6J9 526 aaKnown RBP14.07□□□□□ -0.16
PTPRF-201ENST00000359947 DHRS9Q9BPW9 319 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 GLI3P10071 1580 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 TMEM235A6NFC5 223 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 ANKUB1A6NFN9 424 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 TOX4O94842 621 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 C3AR1Q16581 482 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 PRSS41Q7RTY9 318 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 C17orf78Q8N4C9 275 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 SLC38A9Q8NBW4 561 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 ZNF251Q9BRH9 671 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 ADAT1Q9BUB4 502 aaKnown RBP14.07□□□□□ -0.16
PTPRF-201ENST00000359947 HDGFL3Q9Y3E1 203 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 LRP5LA4QPB2 252 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 H3BMH7 237 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 PELI3Q8N2H9 469 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 OR6K3Q8NGY3 331 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 A0A087WV62 115 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 A0A0D9SG52 128 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 K7EQS6 105 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 NKX2-1P43699 371 aaPredicted RBP14.07□□□□□ -0.16
PTPRF-201ENST00000359947 RFPL4BQ6ZWI9 263 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 NLRP8Q86W28 1048 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 OR2A14Q96R47 310 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 RNF167Q9H6Y7 350 aa14.07□□□□□ -0.16
PTPRF-201ENST00000359947 COX7A1P24310 79 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 HOXD12P35452 270 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 B3GNTL1Q67FW5 361 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-201ENST00000359947 OR10K2Q6IF99 312 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 PWWP2BQ6NUJ5 590 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 GALNT16Q8N428 558 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 FOXB1Q99853 325 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 PTDSS2Q9BVG9 487 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 A0A0B4J203 849 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 CTRB1P17538 263 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 CTRB2Q6GPI1 263 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 ZNF620Q6ZNG0 422 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 SPRED1Q7Z699 444 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 GLCCI1Q86VQ1 547 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 OR2G3Q8NGZ4 309 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 ORAI1Q96D31 301 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 KTI12Q96EK9 354 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-201ENST00000359947 DHHO43323 396 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 IGHV3-13P01766 116 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 IGHV3-7P01780 117 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 ZNF266Q14584 549 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 KIRREL2Q6UWL6 708 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 CT55Q8WUE5 264 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 MRPL22Q9NWU5 206 aaKnown RBP14.06□□□□□ -0.16
PTPRF-201ENST00000359947 OR10A3P58181 314 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 MLF1P58340 268 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 CNRIP1Q96F85 164 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-201ENST00000359947 OCIAD1Q9NX40 245 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 TRIP12Q14669 1992 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-201ENST00000359947 IGHV1OR21-1A0A087WYE8 117 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 CT45A10P0DMU9 189 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 TMEM182Q6ZP80 229 aaPredicted RBP14.06□□□□□ -0.16
PTPRF-201ENST00000359947 ANKRD37Q7Z713 158 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 BAGE3Q86Y29 109 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 BAGE2Q86Y30 109 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 ADAM19Q9H013 955 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 SLCO1C1Q9NYB5 712 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 OR7C2O60412 319 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 HBE1P02100 147 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 CORO2AQ92828 525 aa14.06□□□□□ -0.16
PTPRF-201ENST00000359947 HYAL3O43820 417 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-201ENST00000359947 OR13C7P0DN81 318 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 TNFRSF1AP19438 455 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 ACKR3P25106 362 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 PCBP4P57723 403 aaKnown RBP14.05□□□□□ -0.16
PTPRF-201ENST00000359947 RTP5Q14D33 572 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 XKR7Q5GH72 579 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 CYHR1Q6ZMK1 362 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 NOXO1Q8NFA2 376 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 OR52N1Q8NH53 320 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 SEH1LQ96EE3 360 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 CMTM3Q96MX0 182 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 MYO5AQ9Y4I1 1855 aaKnown RBP14.05□□□□□ -0.16
PTPRF-201ENST00000359947 AGFG2O95081 481 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 GPANK1O95872 356 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 TCRBP04435 133 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 ATP1B1P05026 303 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 FCGR2CP31995 323 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 MAGEB1P43366 347 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 DOC2BQ14184 412 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 EXOSC3Q9NQT5 275 aaKnown RBP14.05□□□□□ -0.16
PTPRF-201ENST00000359947 CLEC5AQ9NY25 188 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 ALG1L2C9J202 215 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 C3orf80F5H4A9 247 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 EPHA8P29322 1005 aaPredicted RBP14.05□□□□□ -0.16
PTPRF-201ENST00000359947 TRA2AQ13595 282 aaKnown RBP eCLIP14.05□□□□□ -0.16
PTPRF-201ENST00000359947 OR2T2Q6IF00 324 aa14.05□□□□□ -0.16
PTPRF-201ENST00000359947 C20orf24Q9BUV8 137 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms