RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 KIF17Q9P2E2 1029 aa5.44□□□□□ -1.54
USP54-202ENST00000413442 POLR3KQ9Y2Y1 108 aaPredicted RBP5.44□□□□□ -1.54
USP54-202ENST00000413442 DYSFO75923 2080 aa5.44□□□□□ -1.54
USP54-202ENST00000413442 TANC2Q9HCD6 1990 aa5.44□□□□□ -1.54
USP54-202ENST00000413442 SLC22A31A6NKX4 558 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 SNTNA6NMZ2 147 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 F5H5K5 113 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 M0R135 149 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 PPIHO43447 177 aaKnown RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 FOXH1O75593 365 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 PTBP3O95758 552 aaKnown RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 LYNP07948 512 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 HSD11B1P28845 292 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 MPV17P39210 176 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 MAGEB1P43366 347 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 LMO4P61968 165 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 EFNB1P98172 346 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 POU4F2Q12837 409 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 CRMP1Q14194 572 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 PTGES3Q15185 160 aaKnown RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 CARTPTQ16568 116 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 MSMPQ1L6U9 139 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 LINC01590Q5TEZ4 76 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 NXNL2Q5VZ03 156 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 KDM4DQ6B0I6 523 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 USP51Q70EK9 711 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 SLC16A9Q7RTY1 509 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 MRPL21Q7Z2W9 205 aaKnown RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 DCXRQ7Z4W1 244 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 KCTD20Q7Z5Y7 419 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 GLCCI1Q86VQ1 547 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 LRRC28Q86X40 367 aaPredicted RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 GID4Q8IVV7 300 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 ZCCHC24Q8N2G6 241 aaKnown RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 KLHL36Q8N4N3 616 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 CYB561A3Q8NBI2 242 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 OR8D4Q8NGM9 314 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 OR4Q3Q8NH05 313 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 OR51F2Q8NH61 342 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 OTOSQ8NHW6 89 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 ST7LQ8TDW4 575 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 RNF133Q8WVZ7 376 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 SPRYD4Q8WW59 207 aaPredicted RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 RFKQ969G6 155 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 SLCO4A1Q96BD0 722 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 MSI2Q96DH6 328 aaKnown RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 SLAMF6Q96DU3 332 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 ZNF799Q96GE5 643 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 RAB3IPQ96QF0 476 aaPredicted RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 TEAD3Q99594 435 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 SMR3AQ99954 134 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 RBM4BQ9BQ04 359 aaKnown RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 PLA2G12AQ9BZM1 189 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 GABARAPL1Q9H0R8 117 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 TPK1Q9H3S4 243 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 WDR76Q9H967 626 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 NTN4Q9HB63 628 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 PNRC2Q9NPJ4 139 aaKnown RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 C8orf4Q9NR00 106 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 KRT84Q9NSB2 600 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 MYEF2Q9P2K5 600 aaKnown RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 TMEFF2Q9UIK5 374 aaPredicted RBP5.43□□□□□ -1.54
USP54-202ENST00000413442 PPP1R3CQ9UQK1 317 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 PCDHGB1Q9Y5G3 927 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 ORC6Q9Y5N6 252 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 MPC1Q9Y5U8 109 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 NPTNQ9Y639 398 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 COMMD3-BMI1R4GMX3 469 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 NIPBLQ6KC79 2804 aaeCLIP5.43□□□□□ -1.54
USP54-202ENST00000413442 CSMD1Q96PZ7 3565 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 HIVEP2P31629 2446 aa5.43□□□□□ -1.54
USP54-202ENST00000413442 IGHV4-61A0A0C4DH41 118 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 ANKRD30BLA7E2S9 258 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 INAFM1C9JVW0 142 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 GPR37O15354 613 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 SPRY3O43610 288 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 MPZL2O60487 215 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 MTRF1O75570 445 aaKnown RBP5.42□□□□□ -1.54
USP54-202ENST00000413442 LIPFP07098 398 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 MSMBP08118 114 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 SPARCP09486 303 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 H2BFMP0C1H6 154 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 PPIAL4GP0DN37 164 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 IRF2P14316 349 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 ALOX5APP20292 161 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 POU1F1P28069 291 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 CFHR2P36980 270 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 CD200P41217 278 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 NPY4RP50391 375 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 MMP16P51512 607 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 BPIFB3P59826 476 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 ERVS71-1P61550 626 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 ROM1Q03395 351 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 PPP1R8Q12972 351 aaKnown RBP5.42□□□□□ -1.54
USP54-202ENST00000413442 GK2Q14410 553 aaPredicted RBP5.42□□□□□ -1.54
USP54-202ENST00000413442 MAD2L1BPQ15013 274 aaPredicted RBP5.42□□□□□ -1.54
USP54-202ENST00000413442 SNAPC1Q16533 368 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 SLC25A30Q5SVS4 291 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 ZBTB37Q5TC79 503 aa5.42□□□□□ -1.54
USP54-202ENST00000413442 LIPNQ5VXI9 398 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms