RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 RNF224P0DH78 156 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 HTR5AP47898 357 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 OR12D2P58182 307 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 DOC2BQ14184 412 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 IRF3Q14653 427 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 RAB39AQ14964 217 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 RAB35Q15286 201 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 TAF13Q15543 124 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 NEDD8Q15843 81 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 ZNF808Q8N4W9 903 aaPredicted RBP16.89■□□□□ 0.29
USP39-218ENST00000493829 YIPF7Q8N8F6 280 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 SPRYD4Q8WW59 207 aaPredicted RBP16.89■□□□□ 0.29
USP39-218ENST00000493829 ASB17Q8WXJ9 295 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 RNASE6Q93091 150 aaKnown RBP16.89■□□□□ 0.29
USP39-218ENST00000493829 MS4A3Q96HJ5 214 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 OR8B4Q96RC9 309 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 HDHD5Q9BXW7 423 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 MRM2Q9UI43 246 aaKnown RBP16.89■□□□□ 0.29
USP39-218ENST00000493829 LRP12Q9Y561 859 aa16.89■□□□□ 0.29
USP39-218ENST00000493829 A0A087WXM4 84 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 ARPC4-TTLL3A0A0A6YYG9 625 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 ZNF878C9JN71 531 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 RPP14O95059 124 aaKnown RBP16.88■□□□□ 0.29
USP39-218ENST00000493829 CLDN14O95500 239 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 KRT8P05787 483 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 CELA3BP08861 270 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 H2BFMP0C1H6 154 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 PLA2G2AP14555 144 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 ACTA2P62736 377 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 ACTG2P63267 376 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 HIST1H3AP68431 136 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 GALK2Q01415 458 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 TAB1Q15750 504 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 ELFN2Q5R3F8 820 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 HIST2H3PS2Q5TEC6 136 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 KCTD18Q6PI47 426 aaPredicted RBP16.88■□□□□ 0.29
USP39-218ENST00000493829 C22orf34Q6ZV56 151 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 HIST2H3AQ71DI3 136 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 FAM220AQ7Z4H9 259 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 MYPOPQ86VE0 399 aaPredicted RBP16.88■□□□□ 0.29
USP39-218ENST00000493829 CPEB3Q8NE35 698 aaKnown RBP16.88■□□□□ 0.29
USP39-218ENST00000493829 RNF133Q8WVZ7 376 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 GATAD2BQ8WXI9 593 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 ATF6BQ99941 703 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 MND1Q9BWT6 205 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 ELOVL3Q9HB03 270 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 B3GNT2Q9NY97 397 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 LCKP06239 509 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 DBHP09172 617 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 CCL2P13500 99 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 APEX1P27695 318 aaKnown RBP16.88■□□□□ 0.29
USP39-218ENST00000493829 ARR3P36575 388 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 PSMB10P40306 273 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 OPRL1P41146 370 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 IDH3GP51553 393 aaPredicted RBP16.88■□□□□ 0.29
USP39-218ENST00000493829 EMX1Q04741 257 aaPredicted RBP16.88■□□□□ 0.29
USP39-218ENST00000493829 MED22Q15528 200 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 CDONQ4KMG0 1287 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 TIMM23BQ5SRD1 257 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 XKRXQ6PP77 449 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 KCTD8Q6ZWB6 473 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 SYT9Q86SS6 491 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 SVOPQ8N4V2 548 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 NANOGP1Q8N7R0 232 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 OR5M11Q96RB7 305 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 MROQ9BYG7 248 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 AMDHD2Q9Y303 409 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 GRIP1Q9Y3R0 1128 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 SLC25A15Q9Y619 301 aa16.88■□□□□ 0.29
USP39-218ENST00000493829 SYNGR3O43761 229 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 HSD11B1P28845 292 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 ZNF83P51522 516 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 EGR3Q06889 387 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 PPA1Q15181 289 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 FBXL19-AS1Q494R0 122 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 TMPRSS11AQ6ZMR5 421 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.87■□□□□ 0.29
USP39-218ENST00000493829 OR1F12Q8NHA8 337 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 MUCL1Q96DR8 90 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 LRRC46Q96FV0 321 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 HDHD2Q9H0R4 259 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 ACOT13Q9NPJ3 140 aa16.87■□□□□ 0.29
USP39-218ENST00000493829 UBR5O95071 2799 aaPredicted RBP16.87■□□□□ 0.29
USP39-218ENST00000493829 TMEM129A0AVI4 362 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 METTL15A6NJ78 407 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 HSMCR30P0CW71 290 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 CCNOP22674 350 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 PRKXP51817 358 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 WNT4P56705 351 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 PLP2Q04941 152 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 TFF3Q07654 80 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 TBCEQ15813 527 aaPredicted RBP16.86■□□□□ 0.29
USP39-218ENST00000493829 ZNF684Q5T5D7 378 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 DPPA2Q7Z7J5 298 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 KLBQ86Z14 1044 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 WFDC8Q8IUA0 241 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 ZNF584Q8IVC4 421 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 CCDC36Q8IYA8 594 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 ZNF679Q8IYX0 411 aa16.86■□□□□ 0.29
USP39-218ENST00000493829 MRPL48Q96GC5 212 aaKnown RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms