RNA–Protein interactions for RNA: snR53

snR53, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR53, Length 91 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR53	snR53	SRP1	Q02821	542 aa	Known RBP	0.32	□□□□□ -2.36
snR53	snR53	CRC1	Q12289	327 aa		0.32	□□□□□ -2.36
snR53	snR53	THR1	P17423	357 aa	Known RBP	0.31	□□□□□ -2.36
snR53	snR53	AAD3	P25612	363 aa		0.31	□□□□□ -2.36
snR53	snR53	CDC12	P32468	407 aa	Known RBP	0.31	□□□□□ -2.36
snR53	snR53	SAK1	P38990	1142 aa		0.31	□□□□□ -2.36
snR53	snR53	YMR124W	P39523	943 aa	Known RBP	0.31	□□□□□ -2.36
snR53	snR53	LYS20	P48570	428 aa	Known RBP	0.31	□□□□□ -2.36
snR53	snR53	VPS36	Q06696	566 aa		0.31	□□□□□ -2.36
snR53	snR53	RFA1	P22336	621 aa	Known RBP	0.3	□□□□□ -2.36
snR53	snR53	RAD27	P26793	382 aa		0.3	□□□□□ -2.36
snR53	snR53	FMO1	P38866	432 aa		0.3	□□□□□ -2.36
snR53	snR53	TEX1	P53851	422 aa	Known RBP	0.3	□□□□□ -2.36
snR53	snR53	ARG7	Q04728	441 aa		0.3	□□□□□ -2.36
snR53	snR53	MDM20	Q12387	796 aa	Known RBP	0.3	□□□□□ -2.36
snR53	snR53	TPK2	P06245	380 aa		0.29	□□□□□ -2.36
snR53	snR53	INO1	P11986	533 aa		0.29	□□□□□ -2.36
snR53	snR53	URE2	P23202	354 aa	Known RBP	0.29	□□□□□ -2.36
snR53	snR53	YKL107W	P34251	309 aa		0.29	□□□□□ -2.36
snR53	snR53	YKR078W	P36158	585 aa	Known RBP	0.29	□□□□□ -2.36
snR53	snR53	ERP5	P38819	212 aa		0.29	□□□□□ -2.36
snR53	snR53	YEL068C	P39977	110 aa		0.29	□□□□□ -2.36
snR53	snR53	PFA3	P42836	336 aa		0.29	□□□□□ -2.36
snR53	snR53	YKE2	P52553	114 aa		0.29	□□□□□ -2.36
snR53	snR53	HDA1	P53973	706 aa		0.29	□□□□□ -2.36
snR53	snR53	GAD1	Q04792	585 aa		0.29	□□□□□ -2.36
snR53	snR53	MTL1	P53214	551 aa		0.28	□□□□□ -2.36
snR53	snR53	IDP3	P53982	420 aa	Known RBP	0.28	□□□□□ -2.36
snR53	snR53	SRD1	P09007	221 aa		0.27	□□□□□ -2.37
snR53	snR53	YCR043C	P25361	127 aa		0.27	□□□□□ -2.37
snR53	snR53	KSP1	P38691	1029 aa	Known RBP	0.27	□□□□□ -2.37
snR53	snR53	YIL024C	P40543	189 aa		0.27	□□□□□ -2.37
snR53	snR53	HOS2	P53096	452 aa	Predicted RBP	0.27	□□□□□ -2.37
snR53	snR53	YGR151C	P53287	111 aa		0.27	□□□□□ -2.37
snR53	snR53	ZRT2	Q12436	422 aa		0.27	□□□□□ -2.37
snR53	snR53	RKM4	Q12504	494 aa		0.27	□□□□□ -2.37
snR53	snR53	RPS9A	O13516	197 aa	Known RBP	0.26	□□□□□ -2.37
snR53	snR53	YEL076C-A	P0CX16	216 aa		0.26	□□□□□ -2.37
snR53	snR53	YLR464W	P0CX17	216 aa		0.26	□□□□□ -2.37
snR53	snR53	YER190C-B	P0CX94	160 aa		0.26	□□□□□ -2.37
snR53	snR53	YEL077W-A	P0CX95	160 aa		0.26	□□□□□ -2.37
snR53	snR53	YGR296C-B	P0CX96	160 aa		0.26	□□□□□ -2.37
snR53	snR53	YPL283W-B	P0CX97	160 aa		0.26	□□□□□ -2.37
snR53	snR53	YPR204C-A	P0CX98	160 aa		0.26	□□□□□ -2.37
snR53	snR53	YCP4	P25349	247 aa	Known RBP	0.26	□□□□□ -2.37
snR53	snR53	YBR238C	P38330	731 aa	Known RBP	0.26	□□□□□ -2.37
snR53	snR53	SIC1	P38634	284 aa		0.26	□□□□□ -2.37
snR53	snR53	MTG2	P38860	518 aa		0.26	□□□□□ -2.37
snR53	snR53	NUP60	P39705	539 aa		0.26	□□□□□ -2.37
snR53	snR53	YEL076C	P39971	216 aa		0.26	□□□□□ -2.37
snR53	snR53	SSY5	P47002	699 aa		0.26	□□□□□ -2.37
snR53	snR53	DUS3	Q06053	668 aa	Known RBP	0.26	□□□□□ -2.37
snR53	snR53	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	0.26	□□□□□ -2.37	not detected
snR53	snR53	LAM4	P38800	1345 aa		0.25	□□□□□ -2.37
snR53	snR53	RPT1	P33299	467 aa	Known RBP	0.25	□□□□□ -2.37
snR53	snR53	PET112	P33893	541 aa		0.25	□□□□□ -2.37
snR53	snR53	IRR1	P40541	1150 aa		0.25	□□□□□ -2.37
snR53	snR53	YIR016W	P40572	265 aa		0.25	□□□□□ -2.37
snR53	snR53	TES1	P41903	349 aa	Known RBP	0.25	□□□□□ -2.37
snR53	snR53	RGC1	Q06108	1083 aa	Known RBP	0.25	□□□□□ -2.37
snR53	snR53	HAL9	Q12180	1030 aa		0.25	□□□□□ -2.37
snR53	snR53	TRP2	P00899	507 aa	Known RBP	0.24	□□□□□ -2.37
snR53	snR53	YMR085W	P0CF18	432 aa		0.24	□□□□□ -2.37
snR53	snR53	MET4	P32389	672 aa		0.24	□□□□□ -2.37
snR53	snR53	LYP1	P32487	611 aa		0.24	□□□□□ -2.37
snR53	snR53	YEL1	P34225	687 aa		0.24	□□□□□ -2.37
snR53	snR53	YBR259W	P38338	688 aa		0.24	□□□□□ -2.37
snR53	snR53	LYS9	P38999	446 aa		0.24	□□□□□ -2.37
snR53	snR53	PMT6	P42934	759 aa		0.24	□□□□□ -2.37
snR53	snR53	IMP4	P53941	290 aa	Known RBP	0.24	□□□□□ -2.37
snR53	snR53	BOP3	P53958	396 aa		0.24	□□□□□ -2.37
snR53	snR53	CTK1	Q03957	528 aa	Known RBP	0.24	□□□□□ -2.37
snR53	snR53	IZH3	Q07959	543 aa		0.24	□□□□□ -2.37
snR53	snR53	YBL113C	Q7M4S9	792 aa		0.24	□□□□□ -2.37
snR53	snR53	RAD2	P07276	1031 aa		0.23	□□□□□ -2.37
snR53	snR53	NPP1	P25353	742 aa		0.23	□□□□□ -2.37
snR53	snR53	URA1	P28272	314 aa	Predicted RBP	0.23	□□□□□ -2.37
snR53	snR53	VRG4	P40107	337 aa		0.23	□□□□□ -2.37
snR53	snR53	ROK1	P45818	564 aa	Predicted RBP	0.23	□□□□□ -2.37
snR53	snR53	BMS1	Q08965	1183 aa	Known RBP	0.23	□□□□□ -2.37
snR53	snR53	AIM44	Q99299	758 aa		0.23	□□□□□ -2.37
snR53	snR53	RPL42A	P0CX27	106 aa	Known RBP	0.22	□□□□□ -2.37
snR53	snR53	RPL42B	P0CX28	106 aa	Known RBP	0.22	□□□□□ -2.37
snR53	snR53	ABF1	P14164	731 aa		0.22	□□□□□ -2.37
snR53	snR53	MKT1	P40850	830 aa	Known RBP	0.22	□□□□□ -2.37
snR53	snR53	MDV1	P47025	714 aa		0.22	□□□□□ -2.37
snR53	snR53	YGR122W	P53272	402 aa		0.22	□□□□□ -2.37
snR53	snR53	RPL34A	P87262	121 aa	Predicted RBP	0.22	□□□□□ -2.37
snR53	snR53	TIP41	Q12199	356 aa		0.22	□□□□□ -2.37
snR53	snR53	LDB16	P25587	256 aa		0.21	□□□□□ -2.38
snR53	snR53	PPZ1	P26570	692 aa		0.21	□□□□□ -2.38
snR53	snR53	YHR097C	P38809	366 aa	Known RBP	0.21	□□□□□ -2.38
snR53	snR53	YIL152W	P40455	235 aa		0.21	□□□□□ -2.38
snR53	snR53	OPT1	P40897	799 aa		0.21	□□□□□ -2.38
snR53	snR53	SAD1	P43589	448 aa		0.21	□□□□□ -2.38
snR53	snR53	ATG36	P46983	293 aa		0.21	□□□□□ -2.38
snR53	snR53	IGO1	P53897	168 aa		0.21	□□□□□ -2.38
snR53	snR53	RPL15B	P54780	204 aa	Predicted RBP	0.21	□□□□□ -2.38
snR53	snR53	YLR225C	Q05948	407 aa	Known RBP	0.21	□□□□□ -2.38
snR53	snR53	RTT10	Q08924	1013 aa		0.21	□□□□□ -2.38

Retrieved 100 of 5,963 RNA–protein pairs in 61.5 ms