RNA–Protein interactions for RNA: YOL038W

PRE6, Transcript of Alpha 4 subunit of the 20S proteasome, yeast

Gene PRE6, Length 765 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE6	YOL038W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	11.49	□□□□□ -0.57	not detected
PRE6	YOL038W	LEE1	Q02799	301 aa	Known RBP	11.49	□□□□□ -0.57
PRE6	YOL038W	CEF1	Q03654	590 aa	Predicted RBP	11.49	□□□□□ -0.57
PRE6	YOL038W	AFT2	Q08957	416 aa		11.49	□□□□□ -0.57
PRE6	YOL038W	GIS3	Q12418	502 aa		11.49	□□□□□ -0.57
PRE6	YOL038W	NAT1	P12945	854 aa	Known RBP	11.48	□□□□□ -0.57
PRE6	YOL038W	KGD2	P19262	463 aa	Predicted RBP	11.48	□□□□□ -0.57
PRE6	YOL038W	HYR1	P40581	163 aa	Known RBP	11.48	□□□□□ -0.57
PRE6	YOL038W	TAF1	P46677	1066 aa		11.48	□□□□□ -0.57
PRE6	YOL038W	YGR237C	P50089	785 aa		11.48	□□□□□ -0.57
PRE6	YOL038W	RGA2	Q06407	1009 aa		11.48	□□□□□ -0.57
PRE6	YOL038W	SPP382	Q06411	708 aa	Predicted RBP	11.48	□□□□□ -0.57
PRE6	YOL038W	ABP140	Q08641	628 aa	Known RBP	11.48	□□□□□ -0.57
PRE6	YOL038W	YPQ1	Q12010	308 aa		11.48	□□□□□ -0.57
PRE6	YOL038W	TEL1	P38110	2787 aa		11.47	□□□□□ -0.57
PRE6	YOL038W	RPS14A	P06367	137 aa	Known RBP	11.47	□□□□□ -0.57
PRE6	YOL038W	SWI3	P32591	825 aa		11.47	□□□□□ -0.57
PRE6	YOL038W	YKT6	P36015	200 aa	Known RBP	11.47	□□□□□ -0.57
PRE6	YOL038W	RPS14B	P39516	138 aa	Known RBP	11.47	□□□□□ -0.57
PRE6	YOL038W	SAH1	P39954	449 aa	Known RBP	11.47	□□□□□ -0.57
PRE6	YOL038W	AIP1	P46680	615 aa	Known RBP	11.47	□□□□□ -0.57
PRE6	YOL038W	YHM2	Q04013	314 aa		11.47	□□□□□ -0.57
PRE6	YOL038W	PPM1	Q04081	328 aa		11.47	□□□□□ -0.57
PRE6	YOL038W	PRM6	Q04705	352 aa		11.47	□□□□□ -0.57
PRE6	YOL038W	SAM3	Q08986	587 aa		11.47	□□□□□ -0.57
PRE6	YOL038W	RPL22A	P05749	121 aa	Known RBP	11.46	□□□□□ -0.57
PRE6	YOL038W	HIS5	P07172	385 aa		11.46	□□□□□ -0.57
PRE6	YOL038W	MAK16	P10962	306 aa	Predicted RBP	11.46	□□□□□ -0.57
PRE6	YOL038W	OM45	P16547	393 aa		11.46	□□□□□ -0.57
PRE6	YOL038W	SGF29	P25554	259 aa		11.46	□□□□□ -0.57
PRE6	YOL038W	CCT5	P40413	562 aa	Known RBP	11.46	□□□□□ -0.57
PRE6	YOL038W	CIR1	P42940	261 aa		11.46	□□□□□ -0.57
PRE6	YOL038W	LSB6	P42951	607 aa		11.46	□□□□□ -0.57
PRE6	YOL038W	NSE5	Q03718	556 aa		11.46	□□□□□ -0.57
PRE6	YOL038W	BSP1	Q06604	576 aa		11.46	□□□□□ -0.57
PRE6	YOL038W	IWR1	Q07532	353 aa	Predicted RBP	11.46	□□□□□ -0.57
PRE6	YOL038W	YDL206W	Q12424	762 aa		11.46	□□□□□ -0.57
PRE6	YOL038W	RNR1	P21524	888 aa	Known RBP	11.45	□□□□□ -0.58
PRE6	YOL038W	SIR1	P21691	654 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	STE11	P23561	717 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	GAC1	P28006	793 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	RAD16	P31244	790 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	FRE1	P32791	686 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	TKL2	P33315	681 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	POL12	P38121	705 aa	Predicted RBP	11.45	□□□□□ -0.58
PRE6	YOL038W	KIC1	P38692	1080 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	TGL3	P40308	642 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	CPR7	P47103	393 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	MUB1	Q03162	620 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	TMN2	Q04562	672 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	GPM2	Q12008	311 aa		11.45	□□□□□ -0.58
PRE6	YOL038W	SPE3	Q12074	293 aa	Known RBP	11.45	□□□□□ -0.58
PRE6	YOL038W	GAL10	P04397	699 aa		11.44	□□□□□ -0.58
PRE6	YOL038W	SAT4	P25333	603 aa	Known RBP	11.44	□□□□□ -0.58
PRE6	YOL038W	CBF2	P32504	956 aa		11.44	□□□□□ -0.58
PRE6	YOL038W	YKL023W	P36103	277 aa	Known RBP	11.44	□□□□□ -0.58
PRE6	YOL038W	YKR051W	P36142	418 aa		11.44	□□□□□ -0.58
PRE6	YOL038W	BCD1	P38772	366 aa		11.44	□□□□□ -0.58
PRE6	YOL038W	SMC3	P47037	1230 aa		11.44	□□□□□ -0.58
PRE6	YOL038W	BFA1	P47113	574 aa		11.44	□□□□□ -0.58
PRE6	YOL038W	UTP8	P53276	713 aa	Known RBP	11.44	□□□□□ -0.58
PRE6	YOL038W	SFB2	P53953	876 aa		11.44	□□□□□ -0.58
PRE6	YOL038W	SEG2	P34250	1132 aa		11.43	□□□□□ -0.58
PRE6	YOL038W	HXT5	P38695	592 aa		11.43	□□□□□ -0.58
PRE6	YOL038W	FIG4	P42837	879 aa		11.43	□□□□□ -0.58
PRE6	YOL038W	RPA49	Q01080	415 aa	Predicted RBP	11.43	□□□□□ -0.58
PRE6	YOL038W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	11.43	□□□□□ -0.58	not detected
PRE6	YOL038W	WAR1	Q03631	944 aa		11.43	□□□□□ -0.58
PRE6	YOL038W	APC11	Q12157	165 aa		11.43	□□□□□ -0.58
PRE6	YOL038W	PDH1	Q12428	516 aa	Known RBP	11.43	□□□□□ -0.58
PRE6	YOL038W	CAN1	P04817	590 aa		11.42	□□□□□ -0.58
PRE6	YOL038W	KAP123	P40069	1113 aa	Known RBP	11.42	□□□□□ -0.58
PRE6	YOL038W	DSE1	P40077	573 aa		11.42	□□□□□ -0.58
PRE6	YOL038W	PSP1	P50896	841 aa	Known RBP	11.42	□□□□□ -0.58
PRE6	YOL038W	YAP7	Q08182	245 aa		11.42	□□□□□ -0.58
PRE6	YOL038W	ECM3	Q99252	613 aa		11.42	□□□□□ -0.58
PRE6	YOL038W	TRS33	Q99394	268 aa		11.42	□□□□□ -0.58
PRE6	YOL038W	COX11	P19516	300 aa	Known RBP	11.41	□□□□□ -0.58
PRE6	YOL038W	PPH22	P23595	377 aa		11.41	□□□□□ -0.58
PRE6	YOL038W	KIP1	P28742	1111 aa		11.41	□□□□□ -0.58
PRE6	YOL038W	RPC25	P35718	212 aa		11.41	□□□□□ -0.58
PRE6	YOL038W	CDC27	P38042	758 aa		11.41	□□□□□ -0.58
PRE6	YOL038W	ASG7	P46993	209 aa		11.41	□□□□□ -0.58
PRE6	YOL038W	VPS25	P47142	202 aa		11.41	□□□□□ -0.58
PRE6	YOL038W	LSP1	Q12230	341 aa	Known RBP	11.41	□□□□□ -0.58
PRE6	YOL038W	NDJ1	Q12366	352 aa		11.41	□□□□□ -0.58
PRE6	YOL038W	VBA3	P25594	458 aa		11.4	□□□□□ -0.58
PRE6	YOL038W	VBA5	P36172	582 aa		11.4	□□□□□ -0.58
PRE6	YOL038W	SHE3	P38272	425 aa	Known RBP	11.4	□□□□□ -0.58
PRE6	YOL038W	MED6	P38782	295 aa		11.4	□□□□□ -0.58
PRE6	YOL038W	CEG1	Q01159	459 aa	Predicted RBP	11.4	□□□□□ -0.58
PRE6	YOL038W	GCN5	Q03330	439 aa		11.4	□□□□□ -0.58
PRE6	YOL038W	TSR1	Q07381	788 aa	Known RBP	11.4	□□□□□ -0.58
PRE6	YOL038W	TAF10	Q12030	206 aa		11.4	□□□□□ -0.58
PRE6	YOL038W	KEX1	P09620	729 aa		11.39	□□□□□ -0.59
PRE6	YOL038W	MET4	P32389	672 aa		11.39	□□□□□ -0.59
PRE6	YOL038W	EFB1	P32471	206 aa	Known RBP	11.39	□□□□□ -0.59
PRE6	YOL038W	RGD1	P38339	666 aa		11.39	□□□□□ -0.59
PRE6	YOL038W	FHL1	P39521	936 aa		11.39	□□□□□ -0.59
PRE6	YOL038W	GEM1	P39722	662 aa		11.39	□□□□□ -0.59

Retrieved 100 of 5,963 RNA–protein pairs in 54.1 ms