RNA–Protein interactions for RNA: YLR022C

SDO1, Transcript of Guanine nucleotide exchange factor (GEF) for Ria1p, yeast

Gene SDO1, Length 753 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SDO1	YLR022C	DCG1	P32460	244 aa		4.25	□□□□□ -1.73
SDO1	YLR022C	STE5	P32917	917 aa		4.25	□□□□□ -1.73
SDO1	YLR022C	ATG19	P35193	415 aa		4.25	□□□□□ -1.73
SDO1	YLR022C	PSF2	P40359	213 aa		4.25	□□□□□ -1.73
SDO1	YLR022C	URM1	P40554	99 aa	Predicted RBP	4.25	□□□□□ -1.73
SDO1	YLR022C	AIM21	P40563	679 aa		4.25	□□□□□ -1.73
SDO1	YLR022C	PSP2	P50109	593 aa	Known RBP	4.25	□□□□□ -1.73
SDO1	YLR022C	YKE2	P52553	114 aa		4.25	□□□□□ -1.73
SDO1	YLR022C	CRF1	Q04930	467 aa		4.25	□□□□□ -1.73
SDO1	YLR022C	TDA5	Q06417	326 aa	Known RBP	4.25	□□□□□ -1.73
SDO1	YLR022C	YDR306C	Q06640	478 aa		4.25	□□□□□ -1.73
SDO1	YLR022C	SSF2	Q12153	453 aa	Predicted RBP	4.25	□□□□□ -1.73
SDO1	YLR022C	AFR1	P33304	620 aa		4.24	□□□□□ -1.73
SDO1	YLR022C	AHC1	Q12433	566 aa		4.24	□□□□□ -1.73
SDO1	YLR022C	PRP9	P19736	530 aa	Known RBP	4.23	□□□□□ -1.73
SDO1	YLR022C	NPP1	P25353	742 aa		4.23	□□□□□ -1.73
SDO1	YLR022C	CDC48	P25694	835 aa	Known RBP	4.23	□□□□□ -1.73
SDO1	YLR022C	PMI40	P29952	429 aa	Known RBP	4.23	□□□□□ -1.73
SDO1	YLR022C	FRD1	P32614	470 aa	Known RBP	4.23	□□□□□ -1.73
SDO1	YLR022C	IOC3	P43596	787 aa		4.23	□□□□□ -1.73
SDO1	YLR022C	YFR016C	P43597	1233 aa	Known RBP	4.23	□□□□□ -1.73
SDO1	YLR022C	PFD1	P46988	109 aa		4.23	□□□□□ -1.73
SDO1	YLR022C	EXG2	P52911	562 aa		4.23	□□□□□ -1.73
SDO1	YLR022C	TPO2	P53283	614 aa		4.23	□□□□□ -1.73
SDO1	YLR022C	MDG1	P53885	366 aa		4.23	□□□□□ -1.73
SDO1	YLR022C	KCS1	Q12494	1050 aa		4.23	□□□□□ -1.73
SDO1	YLR022C	CBP1	P07252	654 aa		4.22	□□□□□ -1.73
SDO1	YLR022C	AAR2	P32357	355 aa	Predicted RBP	4.22	□□□□□ -1.73
SDO1	YLR022C	HBS1	P32769	611 aa	Known RBP	4.22	□□□□□ -1.73
SDO1	YLR022C	YHR131C	P38835	850 aa		4.22	□□□□□ -1.73
SDO1	YLR022C	YGL082W	P53155	381 aa		4.22	□□□□□ -1.73
SDO1	YLR022C	RMT2	Q03305	412 aa		4.22	□□□□□ -1.73
SDO1	YLR022C	BUL2	Q03758	920 aa	Known RBP	4.22	□□□□□ -1.73
SDO1	YLR022C	NPC2	Q12408	173 aa		4.22	□□□□□ -1.73
SDO1	YLR022C	YDR034W-B	Q6Q5X2	51 aa		4.22	□□□□□ -1.73
SDO1	YLR022C	LYS2	P07702	1392 aa		4.22	□□□□□ -1.73
SDO1	YLR022C	ADE8	P04161	214 aa		4.21	□□□□□ -1.74
SDO1	YLR022C	DEF1	P35732	738 aa	Known RBP	4.21	□□□□□ -1.74
SDO1	YLR022C	YBR184W	P38299	523 aa		4.21	□□□□□ -1.74
SDO1	YLR022C	RAI1	P53063	387 aa	Known RBP	4.21	□□□□□ -1.74
SDO1	YLR022C	UBP16	Q02863	499 aa		4.21	□□□□□ -1.74
SDO1	YLR022C	FMP25	Q08023	583 aa		4.21	□□□□□ -1.74
SDO1	YLR022C	RRG1	Q12167	365 aa	Predicted RBP	4.21	□□□□□ -1.74
SDO1	YLR022C	AIM44	Q99299	758 aa		4.21	□□□□□ -1.74
SDO1	YLR022C	CUP1-1	P0CX80	61 aa		4.2	□□□□□ -1.74
SDO1	YLR022C	CUP1-2	P0CX81	61 aa		4.2	□□□□□ -1.74
SDO1	YLR022C	YFL040W	P43562	540 aa		4.2	□□□□□ -1.74
SDO1	YLR022C	UTP8	P53276	713 aa	Known RBP	4.2	□□□□□ -1.74
SDO1	YLR022C	YPR196W	Q06595	470 aa		4.2	□□□□□ -1.74
SDO1	YLR022C	WHI4	Q07655	649 aa	Known RBP	4.2	□□□□□ -1.74
SDO1	YLR022C	ENB1	Q08299	606 aa		4.2	□□□□□ -1.74
SDO1	YLR022C	WRS1	Q12109	432 aa	Known RBP	4.2	□□□□□ -1.74
SDO1	YLR022C	UPC2	Q12151	913 aa		4.2	□□□□□ -1.74
SDO1	YLR022C	GSC2	P40989	1895 aa		4.2	□□□□□ -1.74
SDO1	YLR022C	NUP145	P49687	1317 aa		4.2	□□□□□ -1.74
SDO1	YLR022C	SCT1	P32784	759 aa		4.19	□□□□□ -1.74
SDO1	YLR022C	YRO2	P38079	344 aa		4.19	□□□□□ -1.74
SDO1	YLR022C	MSS4	P38994	779 aa		4.19	□□□□□ -1.74
SDO1	YLR022C	CCM1	P48237	864 aa	Predicted RBP	4.19	□□□□□ -1.74
SDO1	YLR022C	NAN1	Q02931	896 aa	Known RBP	4.19	□□□□□ -1.74
SDO1	YLR022C	LCD1	Q04377	747 aa		4.19	□□□□□ -1.74
SDO1	YLR022C	ECM30	Q06673	1274 aa		4.19	□□□□□ -1.74
SDO1	YLR022C	GUP2	Q08929	609 aa		4.19	□□□□□ -1.74
SDO1	YLR022C	UTP10	P42945	1769 aa	Known RBP	4.18	□□□□□ -1.74
SDO1	YLR022C	NOT3	P06102	836 aa	Known RBP	4.18	□□□□□ -1.74
SDO1	YLR022C	STE13	P33894	931 aa		4.18	□□□□□ -1.74
SDO1	YLR022C	CHS7	P38843	316 aa		4.18	□□□□□ -1.74
SDO1	YLR022C	CTF4	Q01454	927 aa		4.18	□□□□□ -1.74
SDO1	YLR022C	SYF1	Q04048	859 aa	Predicted RBP	4.18	□□□□□ -1.74
SDO1	YLR022C	LAS17	Q12446	633 aa		4.18	□□□□□ -1.74
SDO1	YLR022C	SEC3	P33332	1336 aa	Known RBP	4.18	□□□□□ -1.74
SDO1	YLR022C	YML133C	Q03099	1374 aa		4.17	□□□□□ -1.74
SDO1	YLR022C	PFK1	P16861	987 aa	Known RBP	4.17	□□□□□ -1.74
SDO1	YLR022C	RAD53	P22216	821 aa		4.17	□□□□□ -1.74
SDO1	YLR022C	RPL8B	P29453	256 aa	Known RBP	4.17	□□□□□ -1.74
SDO1	YLR022C	CDC11	P32458	415 aa		4.17	□□□□□ -1.74
SDO1	YLR022C	STE14	P32584	239 aa		4.17	□□□□□ -1.74
SDO1	YLR022C	TOK1	P40310	691 aa		4.17	□□□□□ -1.74
SDO1	YLR022C	ALR2	P43553	858 aa		4.17	□□□□□ -1.74
SDO1	YLR022C	ERP6	P53198	216 aa		4.17	□□□□□ -1.74
SDO1	YLR022C	SPO75	Q07798	868 aa		4.17	□□□□□ -1.74
SDO1	YLR022C	KAR4	P25583	335 aa		4.16	□□□□□ -1.74
SDO1	YLR022C	BUL1	P48524	976 aa		4.16	□□□□□ -1.74
SDO1	YLR022C	HIP1	P06775	603 aa		4.15	□□□□□ -1.75
SDO1	YLR022C	SED4	P25365	1065 aa		4.15	□□□□□ -1.75
SDO1	YLR022C	REC104	P33323	182 aa		4.15	□□□□□ -1.75
SDO1	YLR022C	YJL049W	P47048	450 aa		4.15	□□□□□ -1.75
SDO1	YLR022C	FMP30	Q02883	468 aa		4.15	□□□□□ -1.75
SDO1	YLR022C	SSL1	Q04673	461 aa	Predicted RBP	4.15	□□□□□ -1.75
SDO1	YLR022C	EAF1	Q06337	982 aa		4.15	□□□□□ -1.75
SDO1	YLR022C	HKR1	P41809	1802 aa		4.15	□□□□□ -1.75
SDO1	YLR022C	MSD1	P15179	658 aa	Known RBP	4.14	□□□□□ -1.75
SDO1	YLR022C	HRR25	P29295	494 aa	Known RBP	4.14	□□□□□ -1.75
SDO1	YLR022C	UIP5	P36137	443 aa		4.14	□□□□□ -1.75
SDO1	YLR022C	PET10	P36139	283 aa		4.14	□□□□□ -1.75
SDO1	YLR022C	ERG7	P38604	731 aa		4.14	□□□□□ -1.75
SDO1	YLR022C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
SDO1	YLR022C	VPS30	Q02948	557 aa		4.14	□□□□□ -1.75
SDO1	YLR022C	UBX5	Q06682	500 aa		4.14	□□□□□ -1.75
SDO1	YLR022C	AIM39	Q08223	395 aa		4.14	□□□□□ -1.75

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